blastSeq                Sending Genomic Sequences to NCBI Blast service
coverageDensity         Calculation of the coverage density
findSpecies             Search in the 'species'' Object.
getAnnotation           Downloading or Importing of Annotation Data
getEnsgInfo             Retrieve Gene Information From the NCBI
                        Database.
getFastaFromBed         Get fasta information based on locations in
                        bed-format
getGeneLocation         Extracting Gene Locations
getGeneSeq              Extracting a gene sequence from NCBI database.
getSequenceFromNCBI     Extracts a sequence from the NCBI webpage
hoardeR-package         Collect and Retrieve Annotation Data for
                        Various Genomic Data Using Different Web
                        Services.
intersectXMLAnnot       Intersect XML object with annotation object
plotCoverage            Plots a coverage density object
plotHit                 Visualization of a cross-species hit
print.fa                Print an fa Object
species                 Available species at NCBI
subDose                 Rewrite the Dose File from a Beagle Output
subGprobs               Rewrite the Gprobs File from a Beagle Output
subPhased               Rewrite the Phased File from a Beagle Output
summary.fa              Summarize an fa Object
tableSpecies            Tables the species in xml file
targetScan              Retrieving miRNA target information from
                        targetscan.org
