Package: pctax
Type: Package
Title: Professional Comprehensive Omics Data Analysis
Version: 0.1.1
Authors@R: person("Chen", "Peng", email ="pengchen2001@zju.edu.cn", role = c("aut", "cre"),
          comment = c(ORCID = "0000-0002-9449-7606"))
Description: Provides a comprehensive suite of tools for analyzing omics data. It includes
          functionalities for alpha diversity analysis, beta diversity analysis,
          differential abundance analysis, community assembly analysis, visualization of
          phylogenetic tree, and functional enrichment analysis. With a progressive
          approach, the package offers a range of analysis methods to explore and understand
          the complex communities. It is designed to support researchers and practitioners
          in conducting in-depth and professional omics data analysis.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: R (>= 4.1.0)
LazyData: true
Imports: pcutils (>= 0.2.5), dplyr, ggplot2 (>= 3.2.0), vegan,
        magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats,
        tibble, utils, ggpubr, ggnewscale, ade4, scales
Suggests: picante, ggpmisc, NST, permute, aplot, pheatmap, MASS, Rtsne,
        mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap,
        Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork,
        tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma,
        ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown,
        MetaNet, jsonlite, prettydoc, clipr, zetadiv, ggforce, readxl
VignetteBuilder: knitr
BugReports: https://github.com/Asa12138/pctax/issues
URL: https://github.com/Asa12138/pctax
ByteCompile: true
biocViews: Microbiome, Software, Visualization
NeedsCompilation: no
Packaged: 2024-04-06 15:16:13 UTC; asa
Author: Chen Peng [aut, cre] (<https://orcid.org/0000-0002-9449-7606>)
Maintainer: Chen Peng <pengchen2001@zju.edu.cn>
Repository: CRAN
Date/Publication: 2024-04-10 17:10:05 UTC
Built: R 4.2.3; ; 2024-04-10 18:23:16 UTC; unix
