REPTILE-package         Regulatory Element Prediction
calculate_epimark_deviation
                        Internal - calculating intensity deviation
                        feature
get_option_parser_compute_score
                        Internal - parsing options for
                        REPTILE_compute_score.R
get_option_parser_evaluation
                        Internal - parsing options for
                        REPTILE_evaluate_prediction.R
get_option_parser_training
                        Internal - parsing options for REPTILE_train.R
read_epigenomic_data    Reading epigenomic data from epimark file
read_label              Reading labels of regions from label file
reptile_eval_prediction
                        Evaluating the prediction results
reptile_predict         Predicting enhancer activity of given regions
reptile_predict_genome_wide
                        Predicting enhancer activity
reptile_predict_one_mode
                        Internal - predicting enhancer activity of DMRs
                        or query regions
reptile_train           Learn a REPTILE enhancer model
reptile_train_one_mode
                        Internal - Learn single random forest
                        classifier
rsd                     REPTILE sample data (rsd)
