aaprop                  Normalized amino acids properties
add_1grams              Add 1-grams
as.data.frame.feature_test
                        Coerce feature_test object to a data frame
binarize                Binarize
biogram-package         biogram - analysis of biological sequences
                        using n-grams
calc_criterion          Calculate value of criterion
calc_cs                 Calculate Chi-squared-based measure
calc_ed                 Calculate encoding distance
calc_ig                 Calculate IG for single feature
calc_kl                 Calculate KL divergence of features
calc_pi                 Calculate partition index
calc_si                 Compute similarity index
check_criterion         Check chosen criterion
cluster_reg_exp         Clustering of sequences based on regular
                        expression
code_ngrams             Code n-grams
construct_ngrams        Construct and filter n-grams
count_multigrams        Detect and count multiple n-grams in sequences
count_ngrams            Count n-grams in sequences
count_specified         Count specified n-grams
count_total             Count total number of n-grams
create_encoding         Create encoding
create_feature_target   Create feature according to given contingency
                        matrix
create_ngrams           Get all possible n-Grams
criterion_distribution
                        criterion_distribution class
cut.feature_test        Categorize tested features
decode_ngrams           Decode n-grams
degenerate              Degenerate protein sequence
degenerate_ngrams       Degenerate n-grams
distr_crit              Compute criterion distribution
encoding2df             Convert encoding to data frame
fast_crosstable         2d cross-tabulation
feature_test            feature_test class
full2simple             Convert encoding from full to simple format
gap_ngrams              Gap n-grams
generate_sequence       Generate sequence
generate_single_region
                        Generate single region
generate_single_unigram
                        Generate single unigram
generate_unigrams       Generate unigrams
get_ngrams_ind          Get indices of n-grams
human_cleave            Human signal peptides cleavage sites
is_ngram                Validate n-gram
l2n                     Convert letters to numbers
list2matrix             Convert list of sequences to matrix
n2l                     Convert numbers to letters
ngrams2df               n-grams to data frame
plot.criterion_distribution
                        Plot criterion distribution
position_ngrams         Position n-grams
print.feature_test      Print tested features
read_fasta              Read FASTA files
regenerate              Regenerate n-grams
regional_param          regional_param class
seq2ngrams              Extract n-grams from sequence
simple2full             Convert encoding from simple to full format
summary.feature_test    Summarize tested features
table_ngrams            Tabulate n-grams
test_features           Permutation test for feature selection
validate_encoding       Validate encoding
write_encoding          Write encodings to a file
write_fasta             Write FASTA files
