FISH                    An example data file
cluster.plot            Plot data clusters
detect.outline          Detect otolith outline
enrich.master.list      Link information in the info.file to the
                        coefficients obtained from the otolith images
estimate.outline.reconstruction
                        Estimate the outline reconstruction based on
                        Fourier/wavelet compared to the outlines that
                        have not been transformed
generateShapeCoefficients
                        Get wavelet/Fourier coefficients and basic
                        shape variables
getFourier              Get Fourier coefficients, filtered according to
                        filter
getMasterlist           Get filtered master.list values
getMeasurements         Get simple shape variables, filtered according
                        to filter
getStdFourier           Get standardized Fourier coefficients, filtered
                        according to filter
getStdMeasurements      Get simple shape variables after
                        standardization, filtered according to filter
getStdWavelet           Get standardized wavelet coefficients, filtered
                        according to filter
getWavelet              Get wavelet coefficients, filtered according to
                        filter
outline.reconstruction.plot
                        Plot outline reconstruction
plotFourier             Mean and standard deviation of the Fourier
                        coefficients
plotFourierShape        Mean otolith shape based on Fourier
                        reconstruction
plotWavelet             Mean and standard deviation of the wavelet
                        coefficients
plotWaveletShape        Mean otolith shape based on wavelet
                        reconstruction
read.master.list        Read updated master list
remove.outline          Remove otolith outline
setFilter               Set a filter to analyze the shape data
shape                   An example shapeR instance including 160
                        images.
shapeR                  shapeR
show,shapeR-method      Show a shapeR object
show.original.with.outline
                        Show the extracted outline on top of the
                        original image
smoothout               Contour smoothing
stdCoefs                Standardize coefficients
write.image.with.outline
                        Write outlines on top of the original images
                        for quality checking
