CNOGpro-package	CNOGpro-package
addState	CNOGpro-internal
calculateProb	CNOGpro-internal
carsonella	carsonella
CNOGpro	CNOGpro
copynumberBootstrap	CNOGpro-internal
getGCinwindows	CNOGpro-internal
gethits	CNOGpro-internal
getMembership	CNOGpro-internal
getreadcounts	CNOGpro-internal
getsequence	CNOGpro-internal
HMMcopynumber	CNOGpro-internal
insertRow	CNOGpro-internal
isbetween	CNOGpro-internal
makeViterbimat	CNOGpro-internal
normalizeGC	normalizeGC
plotCNOGpro	plotCNOGpro
printCNOGpro	printCNOGpro
readGenBank	CNOGpro-internal
rgammapois	CNOGpro-internal
runBootstrap	runBootstrap
runHMM	runHMM
sampleChromosome	CNOGpro-internal
setupEmissionMatrix	CNOGpro-internal
setupTransitionMatrix	CNOGpro-internal
solvePR	CNOGpro-internal
spans	CNOGpro-internal
store	store
summaryCNOGpro	summaryCNOGpro
updateGeneTable	CNOGpro-internal
