# Generated by roxygen2: do not edit by hand

export(convertCounts)
export(extractCol)
export(lowIntFilter)
export(rsqCalc)
export(runContrasts)
export(runEdgeRNorm)
export(runIHW)
export(runPower)
export(runQvalue)
export(runSVA)
export(runVoom)
export(summarizeSigCounts)
export(topTable.merge)
export(tpm.direct)
export(tpm.on.subset)
import(DGEobj)
importFrom(DGEobj,addItem)
importFrom(DGEobj,getItem)
importFrom(assertthat,assert_that)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,select)
importFrom(edgeR,DGEList)
importFrom(edgeR,aveLogCPM)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,expandAsMatrix)
importFrom(edgeR,rpkm)
importFrom(limma,contrasts.fit)
importFrom(limma,duplicateCorrelation)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(limma,topTreat)
importFrom(limma,treat)
importFrom(limma,voom)
importFrom(limma,voomWithQualityWeights)
importFrom(qvalue,qvalue)
importFrom(stats,approx)
importFrom(stats,as.formula)
importFrom(stats,complete.cases)
importFrom(stats,model.matrix)
importFrom(stats,power)
importFrom(stringr,str_c)
importFrom(sva,num.sv)
importFrom(sva,sva)
