6336122e7f562d0f422d695f09350914 *DESCRIPTION
c6884bda6b9bb40159a9db28d0ebcf50 *NAMESPACE
259ddb366001e85f0ccc0ad4b002079f *NEWS.md
9216ad0e55b2825166553c3aed7775dd *R/MIC-package.R
0127e7750f308de5961612b866cfddd9 *R/RcppExports.R
f054bcb71fb18ee74880fab964b9cc06 *R/cv.R
69a74928485ee4e3120284ae44bf12fd *R/data.R
6625c489cdfbdc79471ae48c6f3d1378 *R/data_converters.R
8368365087288e19bea9b570f982f214 *R/kmer_batch.R
4cbed0b4f332a9cffa97dcd08f4f04ec *R/meta_data.R
ade43ff76cb811b0045f5e0b848c01f1 *R/patric.R
1ef9b39777299ceeb342929877886982 *R/sysdata.rda
b6b502c2e8fb67be5eb9d34a918722ec *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
9c83dbf4ff7209b84e0f89a77814ea68 *data/ecoffs.rda
46552fd7d53eaecc165fa5311933029e *data/example_mics.rda
02b57bed90b88ddd112654e6c613fabc *inst/scripts/genomes_to_kmers.R
892ce8116b681165030874c043d729ad *inst/scripts/pull_PATRIC_genomes.R
5cc4c3a3d17697e24e171fc1354dfb2a *man/MIC-package.Rd
5ab759e1fce8c4c565c5f3730c05bd31 *man/as.sir_vectorised.Rd
21204b3832dc81a3299fb320e5b07e57 *man/bias.Rd
859d0bfb566eeeeb1569c66045185e52 *man/clean_raw_mic.Rd
8a1273a5181de8f5ef2a5fb8efdd93f9 *man/combined_file_system.Rd
c32a3b369aeeb2c4ac7bcddc7ce4eec1 *man/compare_mic.Rd
c530983d182dc1660ac363e554345fc9 *man/compare_sir.Rd
f35a6e64421467cf59eeb259138acc99 *man/download_patric_db.Rd
38d539083326283e9af036c982c4f49b *man/droplevels.mic_validation.Rd
8d0f0ac5ffcfe19cac25f8d74dd762d8 *man/ecoffs.Rd
daed6dbb0a5a479b6e05f83b4f933b82 *man/essential_agreement.Rd
11becda6f5040e925d97161f8bf740b2 *man/example_mics.Rd
0b33fd6f946d101a3c307bb0b8c7ef3a *man/figures/README-fig-val-ea-1.png
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eba93965f818d2dd29b0486d6e65f320 *man/figures/README-unnamed-chunk-9-1.png
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691b1eb2aec9e1bec96b79d11ba5e631 *man/figures/lifecycle-experimental.svg
ed42e3fbd7cc30bc6ca8fa9b658e24a8 *man/figures/lifecycle-stable.svg
bf2f1ad432ecccee3400afe533404113 *man/figures/lifecycle-superseded.svg
adc91e1c9a222aaac928ec887443aa39 *man/fill_dilution_levels.Rd
327307460286177cbee1dccbefae3795 *man/force_mic.Rd
02c1b44958081db0186fc3041d89d6d1 *man/genome_to_libsvm.Rd
41c6b603dfe8577b1d26bfa5e067d901 *man/genomes_to_kmer_libsvm.Rd
f31ec1fdda159ff7a5876041d1d7b231 *man/get_mic.Rd
df9a4d66fbe3a783ba5600a24bfb75a7 *man/kmers.Rd
5b190da4e71226be27d80ebcb4c6a7a5 *man/load_patric_db.Rd
0139591b1ffad8f0e75d5da8776c38dd *man/mic_censor.Rd
1d4f0c1d3dd33366d4bf5e81c4fb81ab *man/mic_r_breakpoint.Rd
acc49610b91c114f594cc3f1f1e62506 *man/mic_range.Rd
4cc7d03c895949830b683043b8cb03e0 *man/mic_s_breakpoint.Rd
78a04a6a730075be0780edf7882a0d30 *man/mic_uncensor.Rd
50f05d52bac546fb9dc369e29ab01b7b *man/move_files.Rd
d518498ba1748fc1a068cef5c2328b90 *man/plot.mic_validation.Rd
6a9749a343b86da57de8b376ec1187f5 *man/print.mic_validation.Rd
eab18c030109ec49cdc1850e571f3835 *man/print.mic_validation_summary.Rd
f7233151eb157e6987a49ddd045df3b1 *man/pull_PATRIC_genomes.Rd
9f8a6d28d6c2fa4f9718ea1f112a57ae *man/qc_in_range.Rd
4db84caedb81f1d09e69d6f7366a678f *man/qc_on_target.Rd
c04e1e75c1d775439d7ae094ca585123 *man/replace_multiple_slashes.Rd
380fd49275f9e4f7fe0b9b286accab02 *man/reverse_complement.Rd
83a3dac40ec7c0efee01aa7afe88f346 *man/split_and_combine_files.Rd
a22c1df69536efaee175cb5cfe4a1da8 *man/squeezed_index_to_str.Rd
840eb0139f1fe8f3b04e4056816298f7 *man/squeezed_mers.Rd
871f6859f56447eef5326cdf8d519734 *man/standardise_mic.Rd
af03595b7fd7f37cc804629f6bf3f72b *man/subset.mic_validation.Rd
3b5991db0c3eefe50e526ee1e64e293e *man/summary.mic_validation.Rd
aae3dd32ced290ed35d1a8652a89ba9c *man/table.Rd
772c354762419b822ed8358b4487bf63 *man/tidy_patric_meta_data.Rd
47c1cf41914a81aabd75cd73a5037ede *man/train_test_filesystem.Rd
349bb6c2ead6d7c690cc8ea2cc565b66 *man/unsqueezed_index_to_str.Rd
1f7c73831ab4b1df5fa8964cb6dc642f *man/unsqueezed_mers.Rd
41c44a13892eadd1af2bc4c0ab9ede14 *man/xgb.cv.lowmem.Rd
feabd8f6a2de93e938dbc88baed0b882 *src/RcppExports.cpp
4d02c8283f6e8e2ab75a7909776bdc79 *src/kmers.cpp
a3b268c26686fbe4e1b282d271b2093c *tests/testthat.R
18ca29a8328544427cf433c86290f523 *tests/testthat/fixtures/genomes/001.fna
993c7005dfed26e1e7492890bcf0102d *tests/testthat/fixtures/genomes/002.fna
791d9222f803b9ffe6989703dae11fdb *tests/testthat/fixtures/genomes/003.fna
f7a29166773278d60e1bc4524a885733 *tests/testthat/fixtures/genomes/004.fna
0def32aeb0d830f12c3f2e12a1e7e47f *tests/testthat/fixtures/genomes/005.fna
90f7ce692116aa767a1a9a34d765f254 *tests/testthat/fixtures/genomes/006.fna
a5f72c69d6ff4f69aa9f7774ad3c8371 *tests/testthat/fixtures/genomes_libsvm/001.txt
41319003dabd20a0c1d5c77dd5a162a2 *tests/testthat/fixtures/genomes_libsvm/002.txt
a39ade562287e58f0c9d03b8feb6caf2 *tests/testthat/fixtures/genomes_libsvm/003.txt
b5e044c2de5eb5b7a80f00aa07a80c7e *tests/testthat/fixtures/genomes_libsvm/004.txt
73559eb837a8b0a9396e2266c62cf6ed *tests/testthat/fixtures/test_patric_db.txt
bd9d2d41c364a2a552456bc2adda6455 *tests/testthat/test-cv.R
32455ae507a2fa32f9c17760ea3d399e *tests/testthat/test-data_converters.R
8c9510cc1e37ff56a1e157eefbd20d7f *tests/testthat/test-kmer_batch.R
0c5e2bddda25a58efe82579a67e51532 *tests/testthat/test-kmers.R
5d5001791c78305546958ec5ef50a961 *tests/testthat/test-meta_data.R
a989892454215342e68d17f1acb0f67b *tests/testthat/test-patric.R
