Fine-Scale Population Analysis

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Documentation for package ‘FinePop’ version 1.5.2

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FinePop-package Fine-Scale Population Analysis
clip.genepop Remove designated markers from a GENEPOP file.
DJ Jost's D
EBDJ Empirical Bayes estimator of Jost's D
EBFST Empirical Bayes estimator of Fst.
EBGstH Empirical Bayes estimator of Hedrick's G'st
FstBoot Bootstrap sampler of Fst
FstEnv Regression analysis of environmental factors on genetic differentiation
GstH Hedrick's G'st
GstN Nei's Gst.
GstNC Nei and Chesser's Gst
herring An example dataset of Atlantic herring.
jsmackerel An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.
read.frequency Create an allele (haplotype) frequency data object of populations from a frequency format file.
read.genepop Create a genotype data object of populations from a GENEPOP format file.
thetaWC.pair Weir and Cockerham's theta adapted for pairwise Fst.