| AssignEffTox | Determines the optimal dose to assign the next patient cohort. |
| EFFTOX | Obtains estimated posterior probabilities of the four outcomes of (YE,YT) for each dose. |
| PieceMCMC | Returns posterior distribution for key mixture model parameters |
| RandomEffTox | Randomizes Eff-Tox dose proportional to posterior desireability scores. |
| Reoptimize | Gives the Optimal Dose for enrolling next patient cohort. |
| Reoptimize1 | Gives the Optimal Dose for enrolling next patient cohort. Used in the SimPhase123 function. |
| ReturnMeanControl | Gives true mean survival times for the control therapy. |
| ReturnMeansAgent | Gives true mean survival times for doses considered of the experimental agent. |
| ReturnOCS | Gives operating characteristics of phase 123 and conventional design. |
| RunAdaptiveEffToxTrial | Simulates repitions of an Adaptive Eff-Tox Trial. |
| SimPhase123 | Simulates replications of the phase123 and phase 12-3 trials. |
| SimPhase3 | Performs one replication of phase 3 for the phase 123 design, given phase 12 data. |