Miscellaneous Functions for Bioinformatics and Bayesian Statistics

Documentation for package ‘bayesbio’ version 1.0.0

bayesbio-package	bayesbio: Miscellaneous functions useful in bioinformatics and Bayesian statistics
allDups	Identify all duplicates values in a vector.
a_hat_mle	Likelihood function of the James-Stein shrinkage factor.
bayesbio	bayesbio: Miscellaneous functions useful in bioinformatics and Bayesian statistics
cbindFill	cbind while converting missing entries to NA.
createStrings	Creates random, unique character strings.
ggHorizBar	Create a color-labeled horizontal bar plot in ggplot2.
jaccardSets	Jaccard index of two character vectors.
mgsub	Multiple pattern gsub.
nearestTime	Merge data frames based on the nearest datetime differences.
nearestTimeandID	Merge data frames based on the nearest datetime differences and an ID column. Also removes duplicate column names from the result.
p.adjust.nlp	Adjust p-values where n is less than p.
pubmedQuery	Perform PubMed queries on 2x2 combinations of term vectors.
subsupDiag	Add values to the super- and sub-diagonals of a matrix.
unequalVarShrink	Perform James-Stein shrinkage estimation using unequal variances
weightedShrink	Weighted shrinkage estimation.