Functional Data Analysis for Multiplexed Cell Images

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Documentation for package ‘funkycells’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

computePseudoROCCurves	Compute Pseudo-ROC Curves
funkyForest	Compute a Modified Random Forest Model
funkyModel	Fit a Modified Random Forest Model with Bounds and Alignment
getCountData	Get Agent Count Data
getKFunction	Get K function
getKsPCAData	Get K Functions and Compute Principal Components
plotPP	Plot Spatial Point Process
plot_K_functions	Compare K Functions Between outcomes
predict_funkyForest	Predict a funkyForest
simulateMeta	Simulate Meta Variables
simulatePP	Simulate a Point Process
TNBC	Triple Negative Breast Cancer Data
TNBC_meta	Triple Negative Breast Cancer Phenotypes
TNBC_pheno	Triple Negative Breast Cancer Phenotypes