Implementation of the Vegetation Model ModVege

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Documentation for package ‘growR’ version 1.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

aCO2_inverse	Concentration representative year
add_lines	Add data to a ggplot
analyze_parameter_scan	Analyze results of a parameter scan
append_to_table	Write *data* to supplied file in append mode without generating a warning message.
atmospheric_CO2	Atmospheric CO2 concentration
autocut	autocut
box_smooth	Endpoint smoother
browse	Debugging utilities
browse_end	Debugging utilities
build_functional_group	Build the effective functional group as a weighted linear combination.
check_for_package	Check if *package* is available
Combinator	Combinator
compare.R	Compare simulation results
create_combinations	Create Valid Combinations
create_example_environment	Provide an example ModvegeEnvironment
ensure_table_columns	Check if supplied table contains all *required* variables.
ensure_unique_filename	Replace given filename by a version that contains an incremental number in order to prevent overwriting existing files.
fCO2_growth_mod	CO2 growth modifier
fCO2_transpiration_mod	CO2 transpiration modifier
FG_A	Functional group A
FG_B	Functional group B
FG_C	Functional group C
FG_D	Functional group D
fPAR	Radiation limitation
fT	Temperature limitation
FunctionalGroup	Representation of a grassland plant population
fW	Water stress
get_annual_gross_yield	Lookup table returning expected annual gross yields as function of elevation and management intensity.
get_bias	Metric Functions
get_end_of_cutting_season	Last day of cutting season
get_expected_n_cuts	Get number of expected cuts
get_relative_cut_contribution	Relative cut contribution
get_site_name	Extract the name of a site from a filename
growR_package_options	Default options introduced by package growR
growR_run_loop	Run growR simulations
load_data_for_sites	Load experimental data
load_matching_data	Load experimental data
load_measured_data	Load experimental data
logger	Primitive logger for debugging.
make_yearDOY	Create unique DOY + year identifier
ManagementData	Management Data Class
management_parameters	Management practices for Swiss grasslands
mean_absolute_error	Metric Functions
metric_map	List of Performance Metrics
ModvegeEnvironment	growR environment data
ModvegeParameters	Parameter Data Object
ModvegeSite	ModvegeSite
parameter_scan_example	Example results of a parameter scan
parse_year_strings	Parse and generate lists of years.
plot.ModvegeSite	Plot ModVege simulation result overview
plot_parameter_scan	Plot Parameter Scan Results
posieux_weather	Example Weather Data
PscanPlotter	Plot Parameter Scan Results
read_config	Read simulation run configurations from file
root_mean_squared	Metric Functions
run_parameter_scan	Parameter Scan
SEA	Seasonal effect on growth
setup_directory	Initialize growR directory structure
set_growR_verbosity	Set verbosity of growR output.
start_of_growing_season	Determine start of growing season
start_of_growing_season_mtd	Multicriterial Thermal Definition
WeatherData	Weather Data Object
weighted_temperature_sum	Create a weighted temperature sum
willmott	Willmott Index
yield_parameters	Parameters for expected yields in Switzerland