Microbiome Oriented Circadian Rhythm Analysis Toolkit
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘kronos’ version 1.0.0
Help Pages
| bigdata | Snippet of example data to demonstrate the functionality of 'kronos' between and among three different groups |
| bigmeta | Descriptional metadata for the 'bigdata' object, for the purpose of demonstration. |
| build_kronos_formula | Update 'kronos' formula in light of sine and cosine components |
| delistKronos_groupwise | Get Results from list of KronosOut Objects |
| delistKronos_pairwise | Get Results from list of 'KronosOut' Objects |
| fit_cosinor_model | Fit cosinor model |
| fit_groupwise_model | Fit cosinor model |
| fw_kronos | Fit a cosinor model and extract relevant parameters on a feature table. |
| getKronos | Get Results from 'KronosOut' Object |
| getKronos_fit | Get Results from 'KronosOut' Object |
| getKronos_groupwise | Get Results from 'KronosOut' Object |
| getKronos_input | Get Results from 'KronosOut' Object |
| getKronos_pairwise | Get Results from 'KronosOut' Object |
| getKronos_pairwise_p | Get Results from 'KronosOut' Object |
| getKronos_params | Get Results from 'KronosOut' Object |
| getKronos_trace | Get Results from 'KronosOut' Object |
| get_cos_sine | Get sine and cosine components |
| get_vars | Figure out what variable represents time. Called by main 'kronos' function. |
| gg_kronos_acrogram | A plotting method for acrophase circleplots using 'ggplot2'. |
| gg_kronos_circle | A plotting method for circadian plots using 'ggplot2'. |
| gg_kronos_sinusoid | A plotting method for circadian plots using 'ggplot2'. |
| groupdata | Snippet of example data to demonstrate the functionality of 'kronos' between and among three different groups |
| kronos | Fit a cosinor model and extract relevant parameters |
| kronosListToTable | Wrangle results from list of 'KronosOut' Objects to publication ready table. |
| kronosOut-class | An S4 class to contain all output parameters and plotting information from the 'kronos' main pipeline |
| kronos_anova | Extract p-value from full fit |
| kronos_predict | Give tracing information for plotting purposes |
| onevariable | Snippet of example data to demonstrate the functionality of 'kronos' in the most simple scenario. |
| pairwise_cosinor_model | Fit pairwise cosinor models as some sort of TukeyHSD. |
| show-method | Show method for 'kronosOut' object. |
| twowaydata | Snippet of example data to demonstrate the functionality of 'kronos' in the two-factor design scenario. |