Quantify Disease Transmission Within and Between Population
Groups
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Documentation for package ‘bumblebee’ version 0.1.0
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| counts_hiv_transmission_pairs | Observed HIV transmission pairs |
| c_hat | 'estimate_c_hat' Estimates probability of clustering |
| estimated_hiv_transmission_flows | Estimated HIV transmission flows |
| estimate_c_hat | 'estimate_c_hat' Estimates probability of clustering |
| estimate_c_hat.default | 'estimate_c_hat' Estimates probability of clustering |
| estimate_multinom_ci | 'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
| estimate_multinom_ci.default | 'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
| estimate_prob_group_pairing_and_linked | 'estimate_prob_group_pairing_and_linked' Estimates joint probability of linkage |
| estimate_prob_group_pairing_and_linked.default | 'estimate_prob_group_pairing_and_linked' Estimates joint probability of linkage |
| estimate_p_hat | 'estimate_p_hat' Estimates probability of linkage between two individuals |
| estimate_p_hat.default | 'estimate_p_hat' Estimates probability of linkage between two individuals |
| estimate_theta_hat | 'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
| estimate_theta_hat.default | 'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
| estimate_transmission_flows_and_ci | 'estimate_transmission_flows_and_ci' Estimates transmission flows and corresponding confidence intervals |
| estimate_transmission_flows_and_ci.default | 'estimate_transmission_flows_and_ci' Estimates transmission flows and corresponding confidence intervals |
| estim_c_hat | 'estimate_c_hat' Estimates probability of clustering |
| estim_multinom_ci | 'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
| estim_p_hat | 'estimate_p_hat' Estimates probability of linkage between two individuals |
| estim_theta_hat | 'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
| est_c_hat | 'estimate_c_hat' Estimates probability of clustering |
| est_multinom_ci | 'estimate_multinom_ci' Estimates confidence intervals for transmission flows |
| est_p_hat | 'estimate_p_hat' Estimates probability of linkage between two individuals |
| est_theta_hat | 'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |
| flows_and_ci | 'estimate_transmission_flows_and_ci' Estimates transmission flows and corresponding confidence intervals |
| phat | 'estimate_p_hat' Estimates probability of linkage between two individuals |
| pp | 'prep_p_hat' Prepares input data to estimate 'p_hat' |
| prep_phat | 'prep_p_hat' Prepares input data to estimate 'p_hat' |
| prep_p_hat | 'prep_p_hat' Prepares input data to estimate 'p_hat' |
| prep_p_hat.default | 'prep_p_hat' Prepares input data to estimate 'p_hat' |
| prob_group_pairing_and_linked | 'estimate_prob_group_pairing_and_linked' Estimates joint probability of linkage |
| p_hat | 'estimate_p_hat' Estimates probability of linkage between two individuals |
| sampling_frequency | Sampling fequency |
| theta_hat | 'estimate_theta_hat' Estimates conditional probability of linkage (transmission flows) |