Analyze and Create Elegant Directed Acyclic Graphs
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Documentation for package ‘ggdag’ version 0.2.13
Help Pages
A B C D E F G H I L M N P Q R S T U V
-- A --
| activate_collider_paths | Activate paths opened by stratifying on a collider |
| Adjust for variables | Adjust for variables and activate any biasing paths that result |
| adjust_for | Adjust for variables and activate any biasing paths that result |
| anti_join.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| arrange.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| arrange_.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| as.data.frame.tidy_dagitty | Convert a 'tidy_dagitty' object to data.frame |
| as.tbl.tidy_daggity | Convert a 'tidy_dagitty' object to tbl |
| Assess d-separation between variables | D-relationship between variables |
| Assess familial relationships between variables | Familial relationships between variables |
| as_tbl_graph | Convert DAGS to tidygraph |
| as_tbl_graph.dagitty | Convert DAGS to tidygraph |
| as_tbl_graph.tidy_dagitty | Convert DAGS to tidygraph |
| as_tibble.tidy_daggity | Convert a 'tidy_dagitty' object to tbl |
| as_tidy_dagitty | Convert objects into 'tidy_dagitty' objects |
| as_tidy_dagitty.dagitty | Convert objects into 'tidy_dagitty' objects |
| as_tidy_dagitty.data.frame | Convert objects into 'tidy_dagitty' objects |
-- B --
| butterfly_bias | Quickly create a DAGs with common structures of bias |
-- C --
| Canonicalize DAGs | Canonicalize a DAG |
| Colliders | Find colliders |
| collider_triangle | Quickly create a DAGs with common structures of bias |
| confounder_triangle | Quickly create a DAGs with common structures of bias |
| control_for | Adjust for variables and activate any biasing paths that result |
| coordinates | Manipulate DAG coordinates |
| coords2df | Manipulate DAG coordinates |
| coords2list | Manipulate DAG coordinates |
| Covariate Adjustment Sets | Covariate Adjustment Sets |
-- D --
| dag | Create a dagitty DAG |
| DAG Edges | Directed DAG edges |
| DAG Labels | DAG labels |
| dagify | Create a dagitty DAG using R-like syntax |
| dag_adjustment_sets | Covariate Adjustment Sets |
| dag_label | DAG labels |
| dag_paths | Find Open Paths Between Variables |
| distinct.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| dplyr | Dplyr verb methods for 'tidy_dagitty' objects |
-- E --
| Equivalent DAGs and Classes | Generating Equivalent Models |
| Exogenous Variables | Find Exogenous Variables |
| expand_plot | Quickly scale the size of a ggplot |
-- F --
| filter.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| filter_.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| fortify | Fortify a 'tidy_dagitty' object for 'ggplot2' |
| fortify.dagitty | Fortify a 'tidy_dagitty' object for 'ggplot2' |
| fortify.tidy_dagitty | Fortify a 'tidy_dagitty' object for 'ggplot2' |
| full_join.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
-- G --
| geom_dag_collider_edges | Edges for paths activated by stratification on colliders |
| geom_dag_edges | Directed and bidirected DAG edges |
| geom_dag_edges_arc | Directed DAG edges |
| geom_dag_edges_diagonal | Directed DAG edges |
| geom_dag_edges_fan | Directed DAG edges |
| geom_dag_edges_link | Directed DAG edges |
| geom_dag_label | Node text labels |
| geom_dag_label_repel | Repulsive textual annotations |
| geom_dag_node | DAG Nodes |
| geom_dag_point | DAG Nodes |
| geom_dag_text | Node text |
| geom_dag_text_repel | Repulsive textual annotations |
| ggdag | Quickly plot a DAG in ggplot2 |
| ggdag_adjacent | Familial relationships between variables |
| ggdag_adjust | Adjust for variables and activate any biasing paths that result |
| ggdag_adjustment_set | Covariate Adjustment Sets |
| ggdag_ancestors | Familial relationships between variables |
| ggdag_butterfly_bias | Quickly create a DAGs with common structures of bias |
| ggdag_canonical | Canonicalize a DAG |
| ggdag_children | Familial relationships between variables |
| ggdag_classic | Quickly plot a DAG in ggplot2 |
| ggdag_collider | Find colliders |
| ggdag_collider_triangle | Quickly create a DAGs with common structures of bias |
| ggdag_confounder_triangle | Quickly create a DAGs with common structures of bias |
| ggdag_dconnected | D-relationship between variables |
| ggdag_descendants | Familial relationships between variables |
| ggdag_drelationship | D-relationship between variables |
| ggdag_dseparated | D-relationship between variables |
| ggdag_equivalent_class | Generating Equivalent Models |
| ggdag_equivalent_dags | Generating Equivalent Models |
| ggdag_exogenous | Find Exogenous Variables |
| ggdag_instrumental | Find Instrumental Variables |
| ggdag_markov_blanket | Familial relationships between variables |
| ggdag_mediation_triangle | Quickly create a DAGs with common structures of bias |
| ggdag_m_bias | Quickly create a DAGs with common structures of bias |
| ggdag_parents | Familial relationships between variables |
| ggdag_paths | Find Open Paths Between Variables |
| ggdag_paths_fan | Find Open Paths Between Variables |
| ggdag_status | Find variable status |
| ggplot.dagitty | Create a new ggplot |
| ggplot.tidy_dagitty | Create a new ggplot |
| ggrepel functions | Repulsive textual annotations |
| group_by.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
-- H --
| has_labels | DAG labels |
-- I --
| inner_join.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| Instrumental Variables | Find Instrumental Variables |
| is.tidy_dagitty | Test for object class for tidy_dagitty |
| is_collider | Detecting colliders in DAGs |
| is_confounder | Assess if a variable confounds a relationship |
| is_downstream_collider | Detecting colliders in DAGs |
-- L --
| label | DAG labels |
| label<- | DAG labels |
| label<-.dagitty | DAG labels |
| label<-.tidy_dagitty | DAG labels |
| left_join.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
-- M --
| mediation_triangle | Quickly create a DAGs with common structures of bias |
| mutate.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| mutate_.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| m_bias | Quickly create a DAGs with common structures of bias |
-- N --
| Nodes | DAG Nodes |
| node_adjacent | Familial relationships between variables |
| node_ancestors | Familial relationships between variables |
| node_canonical | Canonicalize a DAG |
| node_children | Familial relationships between variables |
| node_collider | Find colliders |
| node_dconnected | D-relationship between variables |
| node_descendants | Familial relationships between variables |
| node_drelationship | D-relationship between variables |
| node_dseparated | D-relationship between variables |
| node_equivalent_class | Generating Equivalent Models |
| node_equivalent_dags | Generating Equivalent Models |
| node_exogenous | Find Exogenous Variables |
| node_instrumental | Find Instrumental Variables |
| node_markov_blanket | Familial relationships between variables |
| node_parents | Familial relationships between variables |
| node_status | Find variable status |
-- P --
| Pathways | Find Open Paths Between Variables |
| print.tidy_dagitty | Print a 'tidy_dagitty' |
| pull_dag | Pull components from DAG objects |
| pull_dag.dagitty | Pull components from DAG objects |
| pull_dag.tidy_dagitty | Pull components from DAG objects |
| pull_dag_data | Pull components from DAG objects |
| pull_dag_data.dagitty | Pull components from DAG objects |
| pull_dag_data.tidy_dagitty | Pull components from DAG objects |
-- Q --
| Quick Plots for Common DAGs | Quickly create a DAGs with common structures of bias |
-- R --
| remove_axes | Quickly remove plot axes and grids |
| remove_grid | Quickly remove plot axes and grids |
| right_join.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
-- S --
| scale_adjusted | Common scale adjustments for DAGs |
| scale_dag | Common scale adjustments for DAGs |
| select.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| select_.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| semi_join.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| simulate_data | Simulate Data from Structural Equation Model |
| slice.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| slice_.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| summarise.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| summarise_.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
-- T --
| tbl_df.tidy_daggity | Convert a 'tidy_dagitty' object to tbl_df |
| Test if Variable Is Collider | Detecting colliders in DAGs |
| theme_dag | Minimalist DAG themes |
| theme_dag_blank | Minimalist DAG themes |
| theme_dag_gray | Simple grey themes for DAGs |
| theme_dag_gray_grid | Simple grey themes for DAGs |
| theme_dag_grey | Simple grey themes for DAGs |
| theme_dag_grey_grid | Simple grey themes for DAGs |
| theme_dag_grid | Minimalist DAG themes |
| tidy_dagitty | Tidy a 'dagitty' object |
| time_ordered_coords | Create a time-ordered coordinate data frame |
| transmute.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
-- U --
| ungroup.tidy_dagitty | Dplyr verb methods for 'tidy_dagitty' objects |
| update_dag | Pull components from DAG objects |
| update_dag.tidy_dagitty | Pull components from DAG objects |
| update_dag<- | Pull components from DAG objects |
| update_dag<-.tidy_dagitty | Pull components from DAG objects |
| update_dag_data<- | Pull components from DAG objects |
| update_dag_data<-.tidy_dagitty | Pull components from DAG objects |
-- V --
| Variable Status | Find variable status |