Gaussian Process Laboratory

---

Documentation for package ‘kergp’ version 0.5.8

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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A C G H I K M N O P Q S T V W

kergp-package

Gaussian Process Laboratory

-- A --

as.list-method	Coerce a 'covTP' Object into a List
as.list-method	Class '"covComp"'

-- C --

checkGrad	Check the Gradient Provided in a 'covMan' Object
checkPar	Check Length and Names of a Vector of Values for Parameters or Bounds
checkX	Generic function: Check the Compatibility of a Design Matrix with a Given Covariance Object
checkX-method	Check the Compatibility of a Design with a Given Covariance Object
checkX-method	Virtual Class '"covAll"'
checkX-method	Class '"covComp"'
checkX-method	Class '"covOrd"'
checkX-method	Class '"covQual"'
coef,methods	Extract Coefficients of a Covariance Kernel Object as Vector, List or Matrix
coef-method	Extract Coefficients of a Covariance Kernel Object as Vector, List or Matrix
coef-method	Class '"covANOVA"'
coef-method	Class '"covComp"'
coef-method	Class '"covOrd"'
coef-method	Class '"covQual"'
coef-method	Class '"covRadial"'
coef-method	Class '"covTP"'
coef<-	Generic Function: Replacement of Coefficient Values
coef<--method	Class '"covANOVA"'
coef<--method	Class '"covComp"'
coef<--method	Class '"covMan"'
coef<--method	Class '"covOrd"'
coef<--method	Class '"covQual"'
coef<--method	Class '"covRadial"'
coef<--method	Class '"covTP"'
coef<--method	Class '"covTS"'
coefLower	Extract or Set Lower/Upper Bounds on Coefficients
coefLower-method	Class '"covANOVA"'
coefLower-method	Class '"covComp"'
coefLower-method	Class '"covMan"'
coefLower-method	Class '"covOrd"'
coefLower-method	Class '"covQual"'
coefLower-method	Class '"covRadial"'
coefLower-method	Class '"covTP"'
coefLower-method	Class '"covTS"'
coefLower<-	Extract or Set Lower/Upper Bounds on Coefficients
coefLower<--method	Class '"covANOVA"'
coefLower<--method	Class '"covMan"'
coefLower<--method	Class '"covOrd"'
coefLower<--method	Class '"covQual"'
coefLower<--method	Class '"covRadial"'
coefLower<--method	Class '"covTP"'
coefLower<--method	Class '"covTS"'
coefUpper	Extract or Set Lower/Upper Bounds on Coefficients
coefUpper-method	Class '"covANOVA"'
coefUpper-method	Class '"covComp"'
coefUpper-method	Class '"covMan"'
coefUpper-method	Class '"covOrd"'
coefUpper-method	Class '"covQual"'
coefUpper-method	Class '"covRadial"'
coefUpper-method	Class '"covTP"'
coefUpper-method	Class '"covTS"'
coefUpper<-	Extract or Set Lower/Upper Bounds on Coefficients
coefUpper<--method	Class '"covANOVA"'
coefUpper<--method	Class '"covMan"'
coefUpper<--method	Class '"covOrd"'
coefUpper<--method	Class '"covQual"'
coefUpper<--method	Class '"covRadial"'
coefUpper<--method	Class '"covTP"'
coefUpper<--method	Class '"covTS"'
coerce-method	Class '"covMan"'
coerce-method	Class '"covOrd"'
coerce-method	Class '"covQual"'
contr.helmod	Modified Helmert Contrast Matrix
corLevCompSymm	Correlation Matrix for the Compound Symmetry Structure
corLevDiag	Correlation or Covariance Matrix for a Diagonal Structure
corLevLowRank	Correlation Matrix for a Low-Rank Structure
corLevSymm	Correlation Matrix for a General Symmetric Correlation Structure
covAll-class	Virtual Class '"covAll"'
covANOVA	Creator for the Class '"covANOVA"'
covANOVA-class	Class '"covANOVA"'
covComp	Creator for the Class '"covComp"' for Composite Covariance Kernels
covComp-class	Class '"covComp"'
covMan	Creator Function for 'covMan' Objects
covMan-class	Class '"covMan"'
covMat	Generic Function: Covariance or Cross-Covariance Matrix Between two Sets of Locations
covMat-method	Class '"covANOVA"'
covMat-method	Class '"covComp"'
covMat-method	Covariance Matrix for a Covariance Kernel Object
covMat-method	Class '"covOrd"'
covMat-method	Class '"covQual"'
covMat-method	Class '"covRadial"'
covMat-method	Class '"covTP"'
covOrd	Warping-Based Covariance for an Ordinal Input
covOrd-class	Class '"covOrd"'
covQual-class	Class '"covQual"'
covQualNested	Nested Qualitative Covariance
covQualNested-class	Class '"covQualNested"'
covRadial	Creator for the Class '"covRadial"'
covRadial-class	Class '"covRadial"'
covTP	Creator for the Class '"covTP"'
covTP-class	Class '"covTP"'
covTS	Creator Function for 'covTS' Objects
covTS-class	Class '"covTS"'

-- G --

gls	Generic Function: Generalized Least Squares Estimation with a Given Covariance Kernel
gls-method	Generalized Least Squares Estimation with a Given Covariance Kernel
gls-methods	Generalized Least Squares Estimation with a Given Covariance Kernel
gp	Gaussian Process Model

-- H --

hasGrad	Generic Function: Extract slot hasGrad of a Covariance Kernel
hasGrad-method	Generic Function: Extract slot hasGrad of a Covariance Kernel

-- I --

influence.gp	Diagnostics for a Gaussian Process Model, Based on Leave-One-Out
inputNames	Generic Function: Names of the Inputs of a Covariance Kernel
inputNames-method	Generic Function: Names of the Inputs of a Covariance Kernel
inputNames<-	Generic Function: Names of the Inputs of a Covariance Kernel
inputNames<--method	Class '"covComp"'
inputNames<--method	Generic Function: Names of the Inputs of a Covariance Kernel

-- K --

k1Exp	Predefined covMan Objects for 1D Kernels
k1Fun1Cos	One-Dimensional Classical Covariance Kernel Functions
k1Fun1Exp	One-Dimensional Classical Covariance Kernel Functions
k1Fun1Gauss	One-Dimensional Classical Covariance Kernel Functions
k1Fun1Matern3_2	One-Dimensional Classical Covariance Kernel Functions
k1Fun1Matern5_2	One-Dimensional Classical Covariance Kernel Functions
k1Fun1PowExp	One-Dimensional Classical Covariance Kernel Functions
k1FunExp	One-Dimensional Classical Covariance Kernel Functions
k1FunGauss	One-Dimensional Classical Covariance Kernel Functions
k1FunMatern3_2	One-Dimensional Classical Covariance Kernel Functions
k1FunMatern5_2	One-Dimensional Classical Covariance Kernel Functions
k1FunPowExp	One-Dimensional Classical Covariance Kernel Functions
k1Gauss	Predefined covMan Objects for 1D Kernels
k1Matern3_2	Predefined covMan Objects for 1D Kernels
k1Matern5_2	Predefined covMan Objects for 1D Kernels
k1PowExp	Predefined covMan Objects for 1D Kernels
kergp	Gaussian Process Laboratory
kernelName	Name of the One-Dimensional Kernel in a Composite Kernel Object
kernelName-method	Class '"covTS"'
kExp	Matérn Kernels
kGauss	Gauss (Squared-Exponential) Kernel
kMatern	Matérn Kernels
kSE	Gauss (Squared-Exponential) Kernel

-- M --

mle	Generic Function: Maximum Likelihood Estimation of a Gaussian Process Model
mle-method	Maximum Likelihood Estimation of Gaussian Process Model Parameters
mle-methods	Maximum Likelihood Estimation of Gaussian Process Model Parameters

-- N --

npar	Generic function: Number of Free Parameters in a Covariance Kernel
npar-method	Class '"covANOVA"'
npar-method	Class '"covOrd"'
npar-method	Class '"covQual"'
npar-method	Class '"covRadial"'
npar-method	Class '"covTP"'
npar-method	Number of Parameters for a Covariance Kernel Object

-- O --

optimMethods

Optimization Methods (or Algorithms) for the 'mle' Method

-- P --

parMap	Generic Function: Map the Parameters of a Composite Covariance Kernel
parMap-method	Map the Parameters of a Structure on the Inputs and Kernel Parameters
parNamesSymm	Vector of Names for the General 'Symm' Parameterisation
parseCovFormula	Parse a Formula or Expression Describing a Composite Covariance Kernel
plot	Plot for a qualitative input
plot-method	Plot for a qualitative input
plot.covQual	Plot for a qualitative input
plot.gp	Diagnostic Plot for the Validation of a 'gp' Object
plot.simulate.gp	Plot Simulations from a 'gp' Object
predict.gp	Prediction Method for the '"gp"' S3 Class
prinKrige	Principal Kriging Functions

-- Q --

q1CompSymm	Qualitative Correlation or Covariance Kernel with one Input and Compound Symmetric Correlation
q1Diag	Qualitative Correlation or Covariance Kernel with one Input and Diagonal Structure
q1LowRank	Qualitative Correlation or Covariance Kernel with one Input and Low-Rank Correlation
q1Symm	Qualitative Correlation or Covariance Kernel with one Input and General Symmetric Correlation

-- S --

scores	Generic Function: Scores for a Covariance Kernel Object
scores-method	Class '"covANOVA"'
scores-method	Class '"covComp"'
scores-method	Class '"covMan"'
scores-method	Class '"covOrd"'
scores-method	Class '"covQual"'
scores-method	Class '"covRadial"'
scores-method	Class '"covTP"'
scores-method	Class '"covTS"'
shapeSlot	Extracts the Slots of a Structure
show-method	Class '"covANOVA"'
show-method	Class '"covComp"'
show-method	Class '"covMan"'
show-method	Class '"covOrd"'
show-method	Class '"covQual"'
show-method	Class '"covRadial"'
show-method	Class '"covTP"'
show-method	Class '"covTS"'
simulate-method	Class '"covOrd"'
simulate-method	Class '"covQual"'
simulate-method	Simulation of a 'covAll' Object
simulate.gp	Simulation of Paths from a 'gp' Object
simulPar	Generic function: Draw Random Values for the Parameters of a Covariance Kernel
simulPar-method	Draw Random Values for the Parameters of a Covariance Kernel
symIndices	Vector of Indices Useful for Symmetric or Anti-Symmetric Matrices.

-- T --

translude

Make Translucent colors

-- V --

varVec	Generic Function: Variance of Gaussian Process at Specific Locations
varVec-method	Class '"covANOVA"'
varVec-method	Class '"covComp"'
varVec-method	Class '"covOrd"'
varVec-method	Class '"covQual"'
varVec-method	Class '"covRadial"'
varVec-method	Class '"covTP"'
varVec-method	Covariance Matrix for a Covariance Kernel Object

-- W --

warpFun	Warpings for Ordinal Inputs
warpNorm	Warpings for Ordinal Inputs
warpPower	Warpings for Ordinal Inputs
warpSpline1	Warpings for Ordinal Inputs
warpSpline2	Warpings for Ordinal Inputs
warpUnorm	Warpings for Ordinal Inputs