A Library for using 'Pathling'
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Documentation for package ‘pathling’ version 7.0.0
Help Pages
| conditions | Synthetic conditions data |
| ds_aggregate | Execute an aggregate query |
| ds_extract | Execute an extract query |
| ds_read | Get data for a resource type from a data source |
| ds_write_delta | Write FHIR data to Delta files |
| ds_write_ndjson | Write FHIR data to NDJSON files |
| ds_write_parquet | Write FHIR data to Parquet files |
| ds_write_tables | Write FHIR data to managed tables |
| Equivalence | Concept map equivalence types |
| ImportMode | ImportMode |
| LOINC_URI | LOINC system URI |
| MimeType | FHIR MIME types |
| pathling_connect | Create or retrieve the Pathling context |
| pathling_disconnect | Disconnect from the Spark session |
| pathling_disconnect_all | Disconnect all Spark connections |
| pathling_encode | Encode FHIR JSON or XML to a dataframe |
| pathling_encode_bundle | Encode FHIR Bundles to a dataframe |
| pathling_examples | Get path to Pathling example data |
| pathling_example_resource | Read resource from Pathling example data |
| pathling_install_spark | Install Spark |
| pathling_is_spark_installed | Check if Spark is installed |
| pathling_read_bundles | Create a data source from FHIR bundles |
| pathling_read_datasets | Create a data source from datasets |
| pathling_read_delta | Create a data source from Delta tables |
| pathling_read_ndjson | Create a data source from NDJSON |
| pathling_read_parquet | Create a data source from Parquet tables |
| pathling_read_tables | Create a data source from managed tables |
| pathling_spark | Get the Spark session |
| pathling_spark_info | Get versions of Spark and other dependencies |
| pathling_version | Get version of Pathling |
| PropertyType | Coding property data types |
| SaveMode | SaveMode |
| SNOMED_URI | SNOMED CT system URI |
| StorageType | Terminology cache storage type |
| to_array | Convert a vector to a SQL array literal |
| tx_designation | Get designations for codings |
| tx_display | Get the display text for codings |
| tx_member_of | Test membership within a value set |
| tx_property_of | Get properties for codings |
| tx_subsumed_by | Test subsumption between codings |
| tx_subsumes | Test subsumption between codings |
| tx_to_coding | Convert codes to Coding structures |
| tx_to_ecl_value_set | Convert a SNOMED CT ECL expression to a ValueSet URI |
| tx_to_loinc_coding | Convert LOINC codes to Coding structures |
| tx_to_snomed_coding | Convert SNOMED CT codes to Coding structures |
| tx_translate | Translate between value sets |
| Version | FHIR versions |