Manipulate with RNNI Tree Space
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Documentation for package ‘rrnni’ version 0.1.1
Help Pages
| as_ranked | Convert a tree to ranked tree |
| common_tips | Find shared tip labels |
| keep_tips | Prune a tree |
| keep_tips.multiPhylo | Prune a tree |
| keep_tips.phylo | Prune a tree |
| keep_tips.rankedPhylo | Prune a tree |
| random_tree | Create a random ranked phylogeny |
| rankedPhylo | Create a ranked tree |
| rankedPhylo.character | Create a ranked tree |
| rankedPhylo.default | Create a ranked tree |
| rankedPhylo.multiPhylo | Create a ranked tree |
| rankedPhylo.numeric | Create a ranked tree |
| rankedPhylo.phylo | Create a ranked tree |
| read_newick | Read a newick tree |
| rnni | Calculate RNNI distance |
| sort_tips | Sort tip labels |
| sort_tips.multiPhylo | Sort tip labels |
| sort_tips.phylo | Sort tip labels |
| tips | Extract tips from tree |
| tips.multiPhylo | Extract tips from tree |
| tips.phylo | Extract tips from tree |