Evaluation of Genotyping Error in Genotype-by-Sequencing Data

Documentation for package ‘whoa’ version 0.0.2

exp_and_obs_geno_freqs	Computed expected and observed genotype frequencies from a 'vcfR' object
geno_freqs_scatter	return a 'ggplot2' plot object of observed and expected genotype freqs
infer_m	get posterior estimates for m from different read depth categories
lobster_buz_2000	Restriction-associated digest (RAD) sequence data from 36 lobsters at 2000 single nucleotide polymorphisms (SNPs)
lobster_buz_2000_as_012_matrix	An 012 matrix from (RAD) sequence data from 36 lobsters at 2000 single nucleotide polymorphisms (SNPs)
make_it_012	just a quick function for making an 012 matrix from a character matrix
posteriors_plot	return a 'ggplot2' plot object of the posterior esimates for heterozyote miscall rates
whoa	whoa: Evaluation of genotyping error in genotype by sequencing data