Analyse Animal Sequential Behaviour and Communication

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Documentation for package ‘AnimalSequences’ version 0.2.0

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association_metrics Calculate Association Metrics for Sequences
average_seq_length Calculate the Average Length of Sequences
calculate_conditional_entropy Calculate Conditional Entropy of B given A in Bits
calculate_distance_matrix Calculate Distance Matrix from Co-occurrence Matrix
calculate_transition_counts Calculate Transition Counts from Sequences
calculate_transition_probs Calculate Transition Probabilities from Sequences
cluster_elements Cluster Elements Using Hierarchical Clustering
compare_distinct_elements_per_list_item Compare True and Shuffled Distinct Elements per List Item
cooccurrence_matrix Calculate Co-occurrence Matrix for Sequences
count_distinct_elements Count Distinct Elements in Sequences
count_distinct_elements_per_list_item Count Distinct Elements per List Item
count_distinct_elements_per_list_item_shuffled Count Distinct Elements per List Item in Shuffled Sequences
element_covariate Calculate Element-Covariate Conditional Probabilities
element_covariate_network Plot the network of elements and covariates based on the long format of sequences
element_duration Calculate Individual Element Durations
element_position Calculate Median Position of Each Element in Sequences
find_most_similar_columns Find Most Similar Columns in a Distance Matrix
generate_sequence Generate a Sequence of Elements
long_to_sequences Convert Long Format to Sequences
median_seq_length Calculate the Median Length of Sequences
menzerath_plot Create a Menzerath-Altmann Plot
min_max_seq_length Calculate the Minimum and Maximum Length of Sequences
perform_clustering Perform Various Clustering Methods
plot_seq_length_distribution Plot the Distribution of Sequence Lengths
redundancy Calculate Observed and Expected Redundancy of Sequences
sd_seq_length Calculate the Standard Deviation of Sequence Lengths
sequences_to_long Convert Sequences to Long Format
sequence_duration_summary Summarize Sequence Durations
sequence_length_summary Summarize Sequence Lengths
sequence_length_summary_covariate Summarize Sequence Lengths by Covariate
sequence_length_summary_element Summarize Sequence Lengths by Element
shuffle_sequences_across Shuffle Elements Across All Sequences
shuffle_sequences_within Shuffle Elements Within Each Sequence
temporal_overlap Temporal Overlap
transition_chisq Perform a Chi-Squared Test for Transition Counts
transition_entropy Calculate Transition Entropy for Sequences
transition_predictions Transition Predictions
transition_test Perform a Statistical Test for Transition Probabilities
zipf_plot Create a Zipf's Law Plot