Age-Specific Bayesian Survival Trajectory Analysis from Incomplete Census or Capture-Recapture/Recovery Data

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Documentation for package ‘BaSTA’ version 2.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

BaSTA-package	BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.
BaSTA	BaSTA: Parametric Bayesian estimation of age-specific survival for truncated and censored capture-recapture or census data.
basta	Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.
basta.default	Parametric Bayesian estimation of age-specific survival for left-truncated and right-censored capture-mark-recapture or census data.
bastaCensDat	Example of census data for BaSTA analysis.
bastaCensOut	Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated census dataset.
bastaCMRdat	Example of capture-mark-recapture data for BaSTA analysis.
bastaCMRout	Output from a Bayesian Survival Trajectory Analysis (BaSTA) analysis on a simulated capture-mark-recapture (CMR) dataset.
CensusToCaptHist	Constructs a capture-history matrix from repeated individual observations to be used in Bayesian Survival Trajectory Analysis (BaSTA).
coef.multibasta	Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.
DataCheck	Error checking for BaSTA input data.
FixCMRdata	Fix issues on CMR input data for BaSTA.
multibasta	Function to run multiple BaSTA models on the same dataset.
plot.basta	Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
print.basta	Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
print.bastaCheckCens	Summary of outputs from the data checking function in BaSTA.
print.bastaCheckCMR	Summary of outputs from the data checking function in BaSTA.
print.multibasta	Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.
summary.basta	Summarizing and plotting Bayesian Survival Trajectory Analysis (BaSTA) model outputs.
summary.bastaCheckCens	Summary of outputs from the data checking function in BaSTA.
summary.bastaCheckCMR	Summary of outputs from the data checking function in BaSTA.
summary.multibasta	Summarizing multiple Bayesian Survival Trajectory Analsys (BaSTA) model output.