Sequence Clustering with Discrete-Output HMMs
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Documentation for package ‘DBHC’ version 0.0.3
Help Pages
| assign.clusters | Cluster Assignment |
| cluster.bic | HMM BIC |
| count.parameters | Count HMM Parameters |
| emission.heatmap | Heatmap Emission Probabilities |
| hmm.clust | DBHC Algorithm |
| model.ll | Get HMM Log Likelihood |
| partition.bic | Partition BIC |
| select.seeds | Seed Selection Procedure |
| seq2hmm.ll | Sequence-to-HMM Likelihood |
| size.search | Size Search Algorithm |
| smooth.hmm | Smooth HMM Parameters |
| smooth.probabilities | Smooth Probabilities |
| transition.heatmap | Heatmap Transition Probabilities |