Identify Individuals with Unusual Geo-Genetic Patterns

Documentation for package ‘GGoutlieR’ version 1.0.2

anc_coeff_to_GeneticSimilarityMatrix	calculate genetic similarity from ancestry coefficients.
get_GGNet_adjacency_matrix	obtain an adjacency matrix to make a network graph
ggoutlier	Identify outliers with unusual geo-genetic patterns
ggoutlier_compositeKNN	GGoutlieR with the composite approach
ggoutlier_example	Example of 'ggoutlier' output
ggoutlier_geneticKNN	GGoutlieR with the genetic KNN approach
ggoutlier_geoKNN	GGoutlieR with the geographical KNN approach
ipk_anc_coef	Ancestry coefficients of IPK barley landraces
ipk_geo_coord	Geographical origins of IPK barley landraces
plot_ggoutlier	Visualize GGoutlieR results on a geographical map
summary_ggoutlier	Summarize GGoutlieR results