Gene Network Inference from Time-Series Transcriptomic Data

Documentation for package ‘TDCor’ version 0.1-2

TDCor-package	TDCor algorithm for gene regulatory network inference
CalculateDPI	Generate the DPI database to be used by the TDCOR main function
CalculateTPI	Generate the TPI database to be used by the TDCOR main function
clean.at	Elimininate from a vector of gene codes the genes for which no data is available.
draw.profile	Plot the expression profile of a 'gene' in 'dataset'
estimate.delay	Estimate the time shift between two gene profiles and make a plot
LR_dataset	Lateral root transcriptomic dataset
l_genes	l_genes
l_names	l_names
l_prior	l_prior
shortest.path	Calculate the shortest path linking every pairs of nodes in the network
TDCOR	The TDCOR main function
TF	Table of 1834 Arabidopsis Transcription factors
times	The 'times' vector to use with the lateral root dataset
UpdateDPI	Update or check the DPI database
UpdateTPI	Update or check the TPI database