Tools for Prevalence Assessment Studies

---

Documentation for package ‘prevalence’ version 0.4.1

• DESCRIPTION file.
• Package NEWS.

Help Pages

prevalence-package	Tools for prevalence assessment studies
as.matrix-method	Methods for Function 'as.matrix' in Package 'prevalence'
as.matrix-methods	Methods for Function 'as.matrix' in Package 'prevalence'
autocorr.plot-method	Plotting functions from package 'coda'
autocorr.plot-methods	Plotting functions from package 'coda'
betaExpert	Calculate the parameters of a Beta distribution based on expert information
betaPERT	Calculate the parameters of a Beta-PERT distribution
convert-methods	Methods for Function 'as.matrix' in Package 'prevalence'
define_prior	Definition of 'truePrevMulti' and 'truePrevMulti2' model
define_prior2	Definition of 'truePrevMulti' and 'truePrevMulti2' model
define_x	Definition of 'truePrevMulti' and 'truePrevMulti2' model
densplot-method	Plotting functions from package 'coda'
densplot-methods	Plotting functions from package 'coda'
gelman.plot-method	Plotting functions from package 'coda'
gelman.plot-methods	Plotting functions from package 'coda'
plot-method	Methods for Function 'plot' in Package 'prevalence'
plot-methods	Methods for Function 'plot' in Package 'prevalence'
plot-methods-coda	Plotting functions from package 'coda'
plot.betaExpert	Calculate the parameters of a Beta distribution based on expert information
plot.betaPERT	Calculate the parameters of a Beta-PERT distribution
prev-class	Class '"prev"'
prevalence	Tools for prevalence assessment studies
print-method	Methods for Function 'print' in Package 'prevalence'
print-methods	Methods for Function 'print' in Package 'prevalence'
print.betaExpert	Calculate the parameters of a Beta distribution based on expert information
print.betaPERT	Calculate the parameters of a Beta-PERT distribution
propCI	Calculate confidence intervals for prevalences and other proportions
show-method	Methods for Function 'show' in Package 'prevalence'
show-methods	Methods for Function 'show' in Package 'prevalence'
summary-method	Methods for Function 'summary' in Package 'prevalence'
summary-methods	Methods for Function 'summary' in Package 'prevalence'
traceplot-method	Plotting functions from package 'coda'
traceplot-methods	Plotting functions from package 'coda'
truePrev	Estimate true prevalence from individuals samples
truePrevMulti	Estimate true prevalence from individuals samples using multiple tests - conditional probability scheme
truePrevMulti2	Estimate true prevalence from individuals samples using multiple tests - covariance scheme
truePrevPools	Estimate true prevalence from pooled samples