Ridge Regression with Automatic Selection of the Penalty Parameter

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Documentation for package ‘ridge’ version 3.3

• DESCRIPTION file.
• Package NEWS.

Help Pages

ridge-package	ridge-package description
coef.ridgeLinear	Linear ridge regression.
coef.ridgeLogistic	Logistic ridge regression.
GenBin	Simulated genetic data with a binary phenotypes
GenBin_genotypes	Simulated genetic data with a binary phenotypes
GenBin_phenotypes	Simulated genetic data with a binary phenotypes
GenCont	Simulated genetic data with continuous outcomes
GenCont_genotypes	Simulated genetic data with continuous outcomes
GenCont_phenotypes	Simulated genetic data with continuous outcomes
Gorman	The Ten-Factor data first described by Gorman and Toman (1966).
Hald	Hald data
linearRidge	Linear ridge regression.
linearRidgeGenotypes	Fits linear ridge regression models for genome-wide SNP data.
linearRidgeGenotypesPredict	Predict phenotypes from genome-wide SNP data based on a file of coefficients
logisticRidge	Logistic ridge regression.
logisticRidgeGenotypes	Fits logistic ridge regression models for genomoe-wide SNP data.
logisticRidgeGenotypesPredict	Predict fitted probabilities from genome-wide SNP data based on a file of coefficients
nobs.ridgeLinear	Linear ridge regression.
plot.pvalsRidgeLinear	Compute p-values for ridgeLinear and ridgeLogistic models
plot.pvalsRidgeLogistic	Compute p-values for ridgeLinear and ridgeLogistic models
plot.ridgeLinear	Linear ridge regression.
plot.ridgeLogistic	Logistic ridge regression.
predict.ridgeLinear	Linear ridge regression.
predict.ridgeLogistic	Logistic ridge regression.
print.pvalsRidgeLinear	Compute p-values for ridgeLinear and ridgeLogistic models
print.pvalsRidgeLogistic	Compute p-values for ridgeLinear and ridgeLogistic models
print.ridgeLinear	Linear ridge regression.
print.ridgeLogistic	Logistic ridge regression.
print.summary.ridgeLinear	Linear ridge regression.
print.summary.ridgeLogistic	Logistic ridge regression.
pvals	Compute p-values for ridgeLinear and ridgeLogistic models
pvals.ridgeLinear	Compute p-values for ridgeLinear and ridgeLogistic models
pvals.ridgeLogistic	Compute p-values for ridgeLinear and ridgeLogistic models
ridge	ridge: Linear and logistic ridge regression functions.
summary.ridgeLinear	Linear ridge regression.
summary.ridgeLogistic	Logistic ridge regression.