| admix_fam |
Calculate admixture matrix of a pedigree with known admixture of founders |
| admix_last_gen |
Calculate admixture matrix for last generation of a pedigree with admixture of founders |
| draw_sex |
Draw sex values randomly for a list of individuals |
| fam_ancestors |
Construct an ancestors-only pedigree for one person 'G'-generations deep |
| geno_fam |
Draw random genotypes on a pedigree with known founder genotypes |
| geno_last_gen |
Draw random genotypes for last generation of a pedigree with known founder genotypes |
| kinship_fam |
Calculate kinship matrix of a pedigree with structured founders |
| kinship_last_gen |
Calculate kinship matrix for last generation of a pedigree with structured founders |
| prune_fam |
Remove non-ancestors of a set of individuals from pedigree |
| recomb_admix_inds |
Reduce haplotype ancestry data to population ancestry dosage matrices |
| recomb_fam |
Draw recombination breaks for autosomes from a pedigree |
| recomb_geno_inds |
Reduce haplotype data to genotype matrix |
| recomb_haplo_inds |
Construct haplotypes of individuals given their ancestral blocks and the ancestral haplotype variants |
| recomb_init_founders |
Initialize chromosome structures for founders |
| recomb_last_gen |
Draw recombination breaks for autosomes for last generation of a pedigree |
| recomb_map_fix_ends_chr |
Extrapolate and shift recombination map of one chromosome to ends |
| recomb_map_hg |
Simplified recombination maps for human genomes |
| recomb_map_hg37 |
Simplified recombination maps for human genomes |
| recomb_map_hg38 |
Simplified recombination maps for human genomes |
| recomb_map_inds |
Map recombination breaks from genetic positions to base pair coordinates |
| recomb_map_simplify_chr |
Simplify recombination map of one chromosome to a desired numerical precision |
| sim_pedigree |
Construct a random pedigree |
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