Classes for Storing and Manipulating Taxonomic Data
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Documentation for package ‘taxa’ version 0.4.3
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-- A --
| as_data_frame | Convert a taxa object to a 'data.frame' |
| as_taxon | Convert to a taxon vector |
-- C --
| classification | Taxon class |
-- D --
| db_ref | Valid taxonomy databases |
-- I --
| internodes | Get internodes |
| is_classification | Check if is a classification |
| is_internode | Check if taxa are internodes |
| is_leaf | Check if taxa are leaves |
| is_root | Test if taxa are roots |
| is_stem | Check if taxa are stems |
| is_taxon | Check if something is a taxon object |
| is_taxonomy | Check if something is a taxonomy |
| is_taxon_authority | Check if is a taxon_authority |
| is_taxon_db | Check if something is a taxon_db |
| is_taxon_id | Check if something is a taxon_id object |
| is_taxon_rank | Check if something is a taxon_rank |
-- L --
| leaves | Get leaves |
-- N --
| n_leaves | Number of leaves per taxon |
| n_subtaxa | Number of subtaxa per taxon |
| n_supertaxa | Number of supertaxa per taxon |
-- R --
| roots | Get root taxa |
-- S --
| stems | Get stems |
| subtaxa | Get subtaxa |
| supertaxa | Get supertaxa |
-- T --
| taxa_taxon | Taxon class |
| taxa_taxon-class | Taxon class |
| taxa_taxonomy | Taxonomy class |
| taxa_taxonomy-class | Taxonomy class |
| taxa_taxon_authority | Taxon authority class |
| taxa_taxon_authority-class | Taxon authority class |
| taxa_taxon_db | Taxon database class |
| taxa_taxon_db-class | Taxon database class |
| taxa_taxon_id | Taxon ID class |
| taxa_taxon_id-class | Taxon ID class |
| taxa_taxon_rank | Taxon rank class |
| taxa_taxon_rank-class | Taxon rank class |
| taxon | Taxon class |
| taxon_authority | Taxon authority class |
| taxon_db | Taxon database class |
| taxon_id | Taxon ID class |
| taxon_rank | Taxon rank class |
| tax_auth | Set and get taxon authorities |
| tax_auth.taxa_classification | Set and get taxon authorities |
| tax_auth.taxa_taxon | Set and get taxon authorities |
| tax_auth.taxa_taxonomy | Set and get taxon authorities |
| tax_auth<- | Set and get taxon authorities |
| tax_auth<-.taxa_classification | Set and get taxon authorities |
| tax_auth<-.taxa_taxon | Set and get taxon authorities |
| tax_auth<-.taxa_taxonomy | Set and get taxon authorities |
| tax_author | Set and get taxon authors |
| tax_author.taxa_classification | Set and get taxon authors |
| tax_author.taxa_taxon | Set and get taxon authors |
| tax_author.taxa_taxonomy | Set and get taxon authors |
| tax_author.taxa_taxon_authority | Set and get taxon authors |
| tax_author<- | Set and get taxon authors |
| tax_author<-.taxa_classification | Set and get taxon authors |
| tax_author<-.taxa_taxon | Set and get taxon authors |
| tax_author<-.taxa_taxonomy | Set and get taxon authors |
| tax_author<-.taxa_taxon_authority | Set and get taxon authors |
| tax_cite | Set and get taxon authority citations |
| tax_cite.taxa_classification | Set and get taxon authority citations |
| tax_cite.taxa_taxon | Set and get taxon authority citations |
| tax_cite.taxa_taxonomy | Set and get taxon authority citations |
| tax_cite.taxa_taxon_authority | Set and get taxon authority citations |
| tax_cite<- | Set and get taxon authority citations |
| tax_cite<-.taxa_classification | Set and get taxon authority citations |
| tax_cite<-.taxa_taxon | Set and get taxon authority citations |
| tax_cite<-.taxa_taxonomy | Set and get taxon authority citations |
| tax_cite<-.taxa_taxon_authority | Set and get taxon authority citations |
| tax_date | Set and get taxon authority dates |
| tax_date.taxa_classification | Set and get taxon authority dates |
| tax_date.taxa_taxon | Set and get taxon authority dates |
| tax_date.taxa_taxonomy | Set and get taxon authority dates |
| tax_date.taxa_taxon_authority | Set and get taxon authority dates |
| tax_date<- | Set and get taxon authority dates |
| tax_date<-.taxa_classification | Set and get taxon authority dates |
| tax_date<-.taxa_taxon | Set and get taxon authority dates |
| tax_date<-.taxa_taxonomy | Set and get taxon authority dates |
| tax_date<-.taxa_taxon_authority | Set and get taxon authority dates |
| tax_db | Set and get taxon ID databases |
| tax_db.taxa_classification | Set and get taxon ID databases |
| tax_db.taxa_taxon | Set and get taxon ID databases |
| tax_db.taxa_taxonomy | Set and get taxon ID databases |
| tax_db.taxa_taxon_id | Set and get taxon ID databases |
| tax_db<- | Set and get taxon ID databases |
| tax_db<-.taxa_classification | Set and get taxon ID databases |
| tax_db<-.taxa_taxon | Set and get taxon ID databases |
| tax_db<-.taxa_taxonomy | Set and get taxon ID databases |
| tax_db<-.taxa_taxon_id | Set and get taxon ID databases |
| tax_id | Set and get taxon IDs |
| tax_id.taxa_classification | Set and get taxon IDs |
| tax_id.taxa_taxon | Set and get taxon IDs |
| tax_id.taxa_taxonomy | Set and get taxon IDs |
| tax_id<- | Set and get taxon IDs |
| tax_id<-.taxa_classification | Set and get taxon IDs |
| tax_id<-.taxa_taxon | Set and get taxon IDs |
| tax_id<-.taxa_taxonomy | Set and get taxon IDs |
| tax_name | Set and get taxon names |
| tax_name.taxa_classification | Set and get taxon names |
| tax_name.taxa_taxon | Set and get taxon names |
| tax_name.taxa_taxonomy | Set and get taxon names |
| tax_name<- | Set and get taxon names |
| tax_name<-.taxa_classification | Set and get taxon names |
| tax_name<-.taxa_taxon | Set and get taxon names |
| tax_name<-.taxa_taxonomy | Set and get taxon names |
| tax_rank | Set and get taxon ranks |
| tax_rank.taxa_classification | Set and get taxon ranks |
| tax_rank.taxa_taxon | Set and get taxon ranks |
| tax_rank.taxa_taxonomy | Set and get taxon ranks |
| tax_rank<- | Set and get taxon ranks |
| tax_rank<-.taxa_classification | Set and get taxon ranks |
| tax_rank<-.taxa_taxon | Set and get taxon ranks |
| tax_rank<-.taxa_taxonomy | Set and get taxon ranks |
-- misc --
| %in% | Value matching for taxa package |