| AssignQTL | Assigns QTL to a list of Haplotypes |
| buildhPedigree | Build a haplotype pedrigree from a haplotype list |
| c-method | Class "haploList" |
| getAll | Get alleles |
| haploList | Function to create objects of class 'haploList' |
| haploList-class | Class "haploList" |
| haplotype-class | Class "haplotype" ~~~ |
| hPed2Ped | Transform a haplotype pedigree into a pedigree. |
| ListQTL | Assigns QTL to a list of Haplotypes |
| print-method | Class "haploList" |
| print-method | Class "haplotype" ~~~ |
| RemoveHomozygotes | Remove the homozygotic snp loci from a list of haplotypes |
| SampleBaseHaplotype | Simulate a base population haplotype |
| SampleHaplotype | Simulate a haplotype |
| SampleHaplotypes | Simulate a list of haplotypes |
| SamplePedigree | Simulate a haplotypes in a pedigree |
| show-method | Class "haploList" |
| show-method | Class "haplotype" ~~~ |
| validhaploListObject | Function to validate an object of class 'haploList' |
| [-method | Class "haploList" |