LncRNA Identification and Analysis Using Heterologous Features
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Documentation for package ‘LncFinder’ version 1.1.6
Help Pages
| build_model | Build Users' Own Model |
| compute_EIIP | Extract the EIIP-derived features |
| compute_EucDistance | Compute Euclidean Distance |
| compute_FickettScore | Compute Fickett TESTCODE Score |
| compute_GC | Calculate GC content |
| compute_hexamerScore | Compute Hexamer Score |
| compute_kmer | Compute _k_-mer Features |
| compute_LogDistance | Compute Logarithm Distance |
| compute_pI | Compute Theoretical Isoelectric Point |
| demo_dataset | A demo of dataset |
| demo_DNA.seq | A demo of DNA sequences |
| demo_SS.seq | A demo of secondary structure sequences |
| extract_features | Extract the Features |
| find_orfs | Find ORFs |
| lnc_finder | Long Non-coding RNA Identification |
| make_frequencies | Make the frequencies file for new classifier construction |
| make_referFreq | Make Frequencies File for Log.Dist, Euc.Dist, and hexamer score |
| read_SS | Read Secondary Structure Information |
| run_RNAfold | Obtain the Secondary Structure Sequences Using RNAfold |
| svm_cv | _k_-fold Cross Validation for SVM |
| svm_tune | Parameter Tuning of SVM |