Robust Copy Number Alteration Detection (RCNA)
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Documentation for package ‘RCNA’ version 1.0
Help Pages
| correct_gc_bias | correct_gc_bias: Estimate and correct GC bias in coverage |
| correct_gc_bias.default | correct_gc_bias: Estimate and correct GC bias in coverage |
| correct_gc_bias.RCNA_object | correct_gc_bias: Estimate and correct GC bias in coverage |
| create_RCNA_object | RCNA_object constructor |
| estimate_feature_score | estimate_feature_score: Estimate CNV score for each gene in the annotation file |
| estimate_feature_score.default | estimate_feature_score: Estimate CNV score for each gene in the annotation file |
| estimate_feature_score.RCNA_object | estimate_feature_score: Estimate CNV score for each gene in the annotation file |
| estimate_nkr | estimate_nkr: Estimate CNA "normal" karyotype ranges |
| estimate_nkr.default | estimate_nkr: Estimate CNA "normal" karyotype ranges |
| estimate_nkr.RCNA_object | estimate_nkr: Estimate CNA "normal" karyotype ranges |
| example_obj | Example RCNA_object |
| RCNA_analysis | RCNA_analysis constructor |
| RCNA_analysis-class | RCNA_analysis constructor |
| RCNA_object | RCNA.object definition |
| RCNA_object-class | RCNA.object definition |
| run_RCNA | run_RCNA: Perform RCNA copy number detection workflow |
| run_RCNA.default | run_RCNA: Perform RCNA copy number detection workflow |
| run_RCNA.RCNA_object | run_RCNA: Perform RCNA copy number detection workflow |