Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

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Documentation for package ‘SCORPIUS’ version 1.0.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

SCORPIUS-package	SCORPIUS: Trajectory inference from single-cell RNA sequencing data.
draw_trajectory_heatmap	Draw time-series heatmap
draw_trajectory_plot	Visualise SCORPIUS
extract_modules	Extract modules of features
generate_dataset	Generate a synthetic dataset
gene_importances	Calculate the importance of a feature
ginhoux	scRNA-seq data of dendritic cell progenitors.
infer_initial_trajectory	Infer an initial trajectory through space
infer_trajectory	Infer linear trajectory through space
reduce_dimensionality	Dimensionality reduction
reverse_trajectory	Reverse a trajectory
SCORPIUS	SCORPIUS: Trajectory inference from single-cell RNA sequencing data.
ti_scorpius	Infer a trajectory using SCORPIUS