Stratigraphic Paleobiology Modeling Pipelines

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Documentation for package ‘StratPal’ version 0.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

apply_niche	apply niche model
apply_taphonomy	model taphonomic effects
bounded_niche	define niche from boundaries
discrete_gradient	construct discretized gradient
discrete_niche	niche from discrete data
ornstein_uhlenbeck	simulate ornstein-uhlenbeck (OU) process
ornstein_uhlenbeck_sl	simulate ornstein-uhlenbeck (OU) process (specimen level)
p3	simulate Poisson point process
p3_var_rate	simulate variable rate Poisson point process
plot.pre_paleoTS	plot pre-paleoTS objects
prob_remove	probabilistic removal of elements
random_walk	simulate (un)biased random walk
random_walk_sl	simulate (un)biased random walk (specimen level)
reduce_to_paleoTS	reduce pre-paleoTS format to paleoTS
rej_samp	random numbers from rejection sampling
scenarioA	example data, scenario A from Hohmann et al. (2024)
snd_niche	simple niche model
stasis	simulate phenotypic stasis
stasis_sl	simulate phenotypic stasis (specimen level)
strict_stasis_sl	simulate strict phenotypic stasis (specimen level)
thin	thin a series of events (e.g. fossil occurrences)