add_numbers_above_the_bars	add_numbers_above_the_bars
assign_link_operator_value_to_equation	assign_link_operator_value_to_equation
biomarker_mcc_analysis	biomarker_mcc_analysis
biomarker_synergy_analysis	biomarker_synergy_analysis
biomarker_tp_analysis	biomarker_tp_analysis
calculate_mcc	calculate_mcc
calculate_models_mcc	calculate_models_mcc
calculate_models_synergies_fn	calculate_models_synergies_fn
calculate_models_synergies_fp	calculate_models_synergies_fp
calculate_models_synergies_tn	calculate_models_synergies_tn
calculate_models_synergies_tp	calculate_models_synergies_tp
construct_network	construct_network
count_models_that_predict_synergies	count_models_that_predict_synergies
emba	emba
filter_network	filter_network
get_alt_drugname	get_alt_drugname
get_avg_activity_diff_based_on_mcc_clustering	get_avg_activity_diff_based_on_mcc_clustering
get_avg_activity_diff_based_on_specific_synergy_prediction	get_avg_activity_diff_based_on_specific_synergy_prediction
get_avg_activity_diff_based_on_synergy_set_cmp	get_avg_activity_diff_based_on_synergy_set_cmp
get_avg_activity_diff_based_on_tp_predictions	get_avg_activity_diff_based_on_tp_predictions
get_avg_activity_diff_mat_based_on_mcc_clustering	get_avg_activity_diff_mat_based_on_mcc_clustering
get_avg_activity_diff_mat_based_on_specific_synergy_prediction	get_avg_activity_diff_mat_based_on_specific_synergy_prediction
get_avg_activity_diff_mat_based_on_tp_predictions	get_avg_activity_diff_mat_based_on_tp_predictions
get_avg_link_operator_diff_based_on_synergy_set_cmp	get_avg_link_operator_diff_based_on_synergy_set_cmp
get_avg_link_operator_diff_mat_based_on_mcc_clustering	get_avg_link_operator_diff_mat_based_on_mcc_clustering
get_avg_link_operator_diff_mat_based_on_specific_synergy_prediction	get_avg_link_operator_diff_mat_based_on_specific_synergy_prediction
get_avg_link_operator_diff_mat_based_on_tp_predictions	get_avg_link_operator_diff_mat_based_on_tp_predictions
get_biomarkers	get_biomarkers
get_biomarkers_per_type	get_biomarkers_per_type
get_edges_from_topology_file	get_edges_from_topology_file
get_fitness_from_models_dir	get_fitness_from_models_dir
get_link_operators_from_models_dir	get_link_operators_from_models_dir
get_models_based_on_mcc_class_id	get_models_based_on_mcc_class_id
get_model_names	get_model_names
get_model_predictions	get_model_predictions
get_neighbors	get_neighbors
get_node_colors	get_node_colors
get_node_names	get_node_names
get_observed_model_predictions	get_observed_model_predictions
get_observed_synergies	get_observed_synergies
get_observed_synergies_per_cell_line	get_observed_synergies_per_cell_line
get_perf_biomarkers_per_cell_line	get_perf_biomarkers_per_cell_line
get_stable_state_from_models_dir	get_stable_state_from_models_dir
get_synergy_biomarkers_from_dir	get_synergy_biomarkers_from_dir
get_synergy_biomarkers_per_cell_line	get_synergy_biomarkers_per_cell_line
get_synergy_comparison_sets	get_synergy_comparison_sets
get_synergy_scores	get_synergy_scores
get_synergy_subset_stats	get_synergy_subset_stats
get_unobserved_model_predictions	get_unobserved_model_predictions
get_vector_diff	get_vector_diff
get_x_axis_values	get_x_axis_values
is_comb_element_of	is_comb_element_of
make_barplot_on_models_stats	make_barplot_on_models_stats
make_barplot_on_synergy_subset_stats	make_barplot_on_synergy_subset_stats
plot_avg_link_operator_diff_graph	plot_avg_link_operator_diff_graph
plot_avg_link_operator_diff_graphs	plot_avg_link_operator_diff_graphs
plot_avg_state_diff_graph	plot_avg_state_diff_graph
plot_avg_state_diff_graphs	plot_avg_state_diff_graphs
plot_avg_state_diff_graph_vis	plot_avg_state_diff_graph_vis
plot_mcc_classes_hist	plot_mcc_classes_hist
print_biomarkers_per_predicted_synergy	print_biomarkers_per_predicted_synergy
print_model_and_drug_stats	print_model_and_drug_stats
update_biomarker_files	update_biomarker_files
validate_observed_synergies_data	validate_observed_synergies_data
