collapse_snps_into_genes
                        Collapse SNPs into the gene(s) which they are
                        from
collapse_snps_into_genes_by_impact
                        Collapse SNPs into the gene(s) which they are
                        from and by snpeff impcat
gff                     GFF3 file for example genomes
outgroup                Name of outgroup in the phylogenetic tree.
prewas                  Preprocess SNPs before bGWAS
results                 Results from running prewas() on the example
                        data.
snpeff_vcf              Nucleotide variants in example genome samples
                        with snpeff annotations.
tree                    Phylogenetic tree of example genomes
vcf                     Nucleotide variants in example genome samples
