CompileIter             Compile iterations from one .yr file
Nadults                 Calculate the harmonic mean of the total number
                        of adults
Ne                      Calculate the effective population size (Ne)
Pextinct                Cumulative probability of extinction at the end
                        of the simulation
PrefixAndRepeat         Return a prefixed and repeated string of
                        character
SSMD_matrix             Generate a SSMD matrix with all possible
                        pairwise comparisons
collate_dat             Collate Vortex .dat or .stdat output files into
                        one data.frame
collate_one_dat         Collate one local Vortex output file into a
                        data.frame
collate_proc_data       Collate processed data generated by any of the
                        'collate' functions
collate_run             Collate Vortex .run output files
collate_yr              Collate Vortex .yr output files
conv_l_yr               Convert 'census' data into long format
df2disk                 Save a data.frame as both Rdata and CSV
dot_plot                Dot plots of mean Vortex parameters
fit_regression          Search for the best regression model(s)
get_file_paths          Return file paths of files matching a pattern
                        in a directory
line_plot_year          Line plots of Vortex parameters vs years
line_plot_year_mid      Line plots of Vortex parameters vs years
lookup_table            Summary table of simulation parameters
m_scatter               Generates a matrix of scatter plots
pac.clas                Collated results from Vortex scenarios -
                        Pacioni et al. (2017)
pac.clas.Nadults        Harmonic mean of adults and population sizes
pac.clas.Ne             Effective population size
pac.clas.lookup         Look-up table
pac.clas.pairw          Results of pairwise comparisons of simulation
                        scenarios
pac.lhs                 Collated results from Vortex scenarios -
                        Pacioni et al. (2017)
pac.run.lhs             Collated results from Vortex scenarios -
                        Pacioni et al. (2017)
pac.yr                  Collated results from Vortex scenarios -
                        Pacioni et al. (2017)
pairwise                Pairwise comparisons and ranks of scenarios
pval                    Calculates p-values from z-values
rRec                    Calculate the mean recovery rate (Pacioni et al
                        2017) and compare scenarios
se2sd                   Standard Error from a vector
sta.evy5                Collated results from Vortex scenarios -
                        Campbell et al (2016)
sta.evy5.b11            Collated results from Vortex scenarios -
                        Campbell et al (2016)
sta.main                Collated results from Vortex scenarios -
                        Campbell et al (2016)
vortexR                 vortexR: an R package for Post Vortex
                        Simulation Analysis
