Package: STRMPS
Type: Package
Title: Analysis of Short Tandem Repeat (STR) Massively Parallel
        Sequencing (MPS) Data
Version: 0.5.8
Date: 2018-07-01
Encoding: UTF-8
Author: Søren B. Vilsen
Maintainer: Søren B. Vilsen <svilsen@math.aau.dk>
Description: Loading, identifying, aggregating, manipulating, and analysing short tandem repeat regions of massively parallel sequencing data in forensic genetics. 'STRMPS' can work with the package 'STRaitRazoR' (an R interface to the 'STRaitRazor' commandline tool) for added speed. 'STRaitRazoR' only works on linux and can found at <https://github.com/svilsen/STRaitRazoR>. The analyses and framework implemented in this package relies on the papers of Vilsen et al. (2017) <doi:10.1016/j.fsigen.2017.01.017> and Vilsen et al. (2018) <doi:10.1016/j.fsigen.2018.04.003>. Lastly, note that the parallelisation in the package relies on mclapply() and, thus, speed-ups will only be seen on UNIX based systems.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.1.0), Biostrings, ShortRead
Imports: methods, utils, IRanges, tidyr, tibble, dplyr, stringr, purrr,
        parallel
Suggests: STRaitRazoR
biocViews: Biostrings, ShortRead, IRanges
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-01 17:49:52 UTC; vilsen
Repository: CRAN
Date/Publication: 2018-07-02 08:30:06 UTC
Built: R 4.1.0; ; 2021-05-27 23:59:58 UTC; unix
