BLMM	BLMM
extractedReadsList-class	extractedReadsList-class
extractedReadsListCombined-class	extractedReadsListCombined-class
extractedReadsListNonCombined-class	extractedReadsListNonCombined-class
extractedReadsListReverseComplement-class	extractedReadsListReverseComplement-class
findNeighbours	findNeighbours
findNeighbours,stringCoverageGenotypeList-method	findNeighbours-stringCoverageGenotypeList-method
findStutter	findStutter
findStutter,stringCoverageGenotypeList-method	findStutter-stringCoverageGenotypeList-method
flankingRegions	flankingRegions
genotypeIdentifiedList-class	genotypeIdentifiedList-class
genotypeList	genotypeList
getGenotype	getGenotype
getGenotype,stringCoverageList-method	getGenotype-stringCoverageList-method
identifiedSTRs	identifiedSTRs
identifyNoise	identifyNoise
identifyNoise,stringCoverageList-method	identifyNoise-stringCoverageList-method
identifySTRRegions	identifySTRRegions
identifySTRRegions,character-method	identifySTRRegions-character-method
identifySTRRegions,ShortReadQ-method	identifySTRRegions-ShortReadQ-method
identifySTRRegions.control	identifySTRRegions.control
mergeGenotypeStringCoverage	mergeGenotypeStringCoverage
mergeGenotypeStringCoverage,genotypeIdentifiedList-method	mergeGenotypeStringCoverage-genotypeIdentifiedList-method
mergeNoiseStringCoverage	mergeNoiseStringCoverage
mergeNoiseStringCoverage,noiseIdentifiedList-method	mergeNoiseStringCoverage-noiseIdentifiedList-method
neighbourList-class	neighbourList-class
noiseIdentifiedList-class	noiseIdentifiedList-class
noiseList	noiseList
phredQualityProbability	probabilityOfError
phredQualityScore	qualityScore
solexaQualityProbability	probabilityOfError
solexaQualityScore	qualityScore
stringCoverage	stringCoverage
stringCoverage,extractedReadsList-method	stringCoverage-extractedReadsList-method
stringCoverage,extractedReadsListCombined-method	stringCoverage-extractedReadsListCombined-method
stringCoverage,extractedReadsListNonCombined-method	stringCoverage-extractedReadsListNonCombined-method
stringCoverage,extractedReadsListReverseComplement-method	stringCoverage-extractedReadsListReverseComplement-method
stringCoverage.control	stringCoverage.control
stringCoverageGenotypeList	stringCoverageGenotypeList
stringCoverageGenotypeList-class	stringCoverageGenotypeList-class
stringCoverageList	stringCoverageList
stringCoverageList-class	stringCoverageList-class
stringCoverageNoiseList-class	stringCoverageNoiseList-class
STRMPSWorkflow	STRMPSWorkflow
STRMPSWorkflowBatch	STRMPSWorkflowBatch
STRMPSWorkflowCollectStutters	STRMPSWorkflowCollectStutters
workflow.control	workflow.control
