Package: edmcr
Version: 0.2.0
Date: 2021-09-08
Title: Euclidean Distance Matrix Completion Tools
Description: Implements various general algorithms to estimate missing elements
   of a Euclidean (squared) distance matrix.  
   Includes optimization methods based on semi-definite programming found in
   Alfakih, Khadani, and Wolkowicz (1999)<doi:10.1023/A:1008655427845>, 
   a non-convex position formulation by Fang and O'Leary (2012)<doi:10.1080/10556788.2011.643888>, and 
   a dissimilarity parameterization formulation by Trosset (2000)<doi:10.1023/A:1008722907820>.
   When the only non-missing
   distances are those on the minimal spanning tree, the guided random search
   algorithm will complete the matrix while preserving the minimal spanning tree following
   Rahman and Oldford (2018)<doi:10.1137/16M1092350>.
   Point configurations in specified dimensions can be determined from the completions. 
   Special problems such as the sensor localization problem, 
   as for example in Krislock and Wolkowicz (2010)<doi:10.1137/090759392>,
   as well as reconstructing
   the geometry of a molecular structure, as for example in 
   Hendrickson (1995)<doi:10.1137/0805040>, can also be solved.
   These and other methods are described in the thesis of Adam Rahman(2018)<https://hdl.handle.net/10012/13365>.
Authors@R: c(person(given = "Adam", family = "Rahman",
                    email = "adamrahman@live.ca", 
                    role = c("aut")),
             person(given = "R. Wayne", family = "Oldford",
                    email = "rwoldford@uwaterloo.ca", 
                    role = c("aut", "cre", "ths"))
             )
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
URL: https://github.com/great-northern-diver/edmcr
Depends: R (>= 3.2.0)
Imports: Matrix, igraph, lbfgs, truncnorm, MASS, nloptr, vegan, sdpt3r,
        utils, methods, stats
KeepSource: yes
NeedsCompilation: yes
License: GPL-2 | GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.1
Packaged: 2021-09-08 17:59:30 UTC; rwoldford
Author: Adam Rahman [aut],
  R. Wayne Oldford [aut, cre, ths]
Repository: CRAN
Date/Publication: 2021-09-10 10:40:06 UTC
Built: R 4.1.0; x86_64-apple-darwin17.0; 2021-09-11 11:55:55 UTC; unix
Archs: edmcr.so.dSYM
