Package: utr.annotation
Type: Package
Title: Annotate Variants in the Untranslated Regions
Version: 1.0.4
Authors@R: 
	c(person(given = "Yating",
	  	family = "Liu",
		role = c("aut", "cre"),
		email = "yatinghust@gmail.com",
		comment = c("https://orcid.org/0000-0001-7425-0422")),
	  person(given = "Joseph D.",
		family = "Dougherty",
		role = "aut",
		email = "jdougherty@wustl.edu",
		comment = "https://orcid.org/0000-0002-6385-3997"))
Maintainer: Yating Liu <yatinghust@gmail.com>
Description: A fast, user-friendly tool for annotating potential deleterious variants in the untranslated regions for both human and mouse species. Y Liu, JD Dougherty (2021) <doi:10.1101/2021.06.23.449510>.
License: GPL (>= 3)
Encoding: UTF-8
SystemRequirements: Linux or MacOS Intel chip tensorflow (1.14.0)
Depends: R (>= 3.5.0)
Imports: parallel, doParallel, data.table, readr, stringr, biomaRt,
        vcfR, Biostrings, dplyr, tidyr, keras, AnnotationHub,
        ensembldb, AnnotationFilter, BiocGenerics, GenomicFeatures,
        GenomicRanges, IRanges, foreach, rtracklayer, stats, utils,
        xml2
Suggests: testthat, knitr, rmarkdown, ggplot2
RoxygenNote: 7.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-08-22 22:39:35 UTC; yatingliu
Author: Yating Liu [aut, cre] (<https://orcid.org/0000-0001-7425-0422>),
  Joseph D. Dougherty [aut] (<https://orcid.org/0000-0002-6385-3997>)
Repository: CRAN
Date/Publication: 2021-08-23 06:40:02 UTC
Built: R 4.1.0; ; 2021-08-24 12:45:26 UTC; unix
