Tissue-Specific Enrichment Analysis

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Documentation for package ‘deTS’ version 1.0

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deTS-package Tissue-Specific Enrichment Analysis Tissue-Specific Enrichment Analysis
correction_factor Gene average expression level and standard deviation in GTEx data
deTS Tissue-Specific Enrichment Analysis Tissue-Specific Enrichment Analysis
ENCODE_z_score ENCODE z-score to define tissue-specific genes
GTEx_t_score GTEx t-score to define tissue-specific genes
GWAS_gene Gene symbol query data for single sample
GWAS_gene_multiple Gene symbol query data for multiple samples
query_ENCODE ENCODE raw query data
query_GTEx GTEx raw query data
tsea.analysis Tissue-specific enrichment analysis for query gene list
tsea.analysis.multiple Tissue-specific enrichment analysis for multi query gene lists
tsea.expression.decode Tissue-specific enrichment analysis for RNA-Seq expression profiles
tsea.expression.normalization RNA-Seq expression profiles normalization
tsea.plot Tissue-specific enrichment analysis result heatmap plot
tsea.summary Tissue-specific enrichment analysis result summary