RT-QuIC Data Formatting and Analysis
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Documentation for package ‘quicR’ version 2.1.0
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| quicR-package | @description Data handling for real-time quaking induced conversion assays |
| add_reps | Add replicates |
| BMG_format | Format Table for BMG Sample ID Import |
| calculate_metrics | Generate a dataframe with calculated metrics. |
| calculate_MPR | Calculate the Maxpoint Ratio |
| calculate_MS | Calculate Maximum Slope |
| calculate_threshold | Calculate a Threshold for Rate Determination |
| calculate_TtT | Calculate Time to Threshold |
| convert_tables | Convert tables into a single column in a dataframe. |
| get_meta | Retrieve the BMG metadata |
| get_real | Get Real-Time RT-QuIC Fluorescence Data |
| get_sample_locations | Get the well locations of the samples used in the RT-QuIC run. |
| get_wells | Get the Wells Used in the RT-QuIC Run. |
| normalize_RFU | Normalize Fluorescence |
| organize_tables | Organize MARS Tables |
| plate_view | Real-Time Plate View |
| plot_metrics | Plot metrics generated from the "calculate" family of quicR functions. |
| quicR | @description Data handling for real-time quaking induced conversion assays |
| separate_raw | Separate Real-Time Data into separate dataframes. |
| transpose_real | Transpose Real-Time Data |