Format Output of Various Routines in a Suitable Way for Reports
and Publication
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Documentation for package ‘Publish’ version 2023.01.17
Help Pages
| Publish-package | Publish package |
| acut | Automatic selection and formatting of breaks in 'cut' |
| ci.mean | Compute mean values with confidence intervals |
| ci.mean.default | Compute mean values with confidence intervals |
| CiTable | CiTable data |
| coxphSeries | Run a series of Cox regression models |
| Diabetes | Diabetes data of Dr John Schorling |
| fixRegressionTable | Expand regression coefficient table |
| followupTable | Summary tables for a given followup time point. |
| formatCI | Formatting confidence intervals |
| glmSeries | Run a series of generalized linear regression analyses |
| labelUnits | labelUnits |
| lazyDateCoding | Efficient coding of date variables |
| lazyFactorCoding | Efficient coding of factor levels |
| org | Wrapper function for publish with output format org |
| parseInteractionTerms | Parse interaction terms |
| plot.ci | Plot confidence intervals |
| plot.regressionTable | Plotting regression coefficients with confidence limits |
| plot.subgroupAnalysis | plot.subgroupAnalysis |
| plotConfidence | Plot confidence intervals |
| print.ci | Print confidence intervals |
| print.subgroupAnalysis | Printing univariate tables |
| print.summary.regressionTable | Formatting regression tables |
| print.table2x2 | print results of 2x2 contingency table analysis |
| print.univariateTable | Printing univariate tables |
| pubformat | Format numbers for publication |
| publish | Publishing tables and figures |
| publish.CauseSpecificCox | Tabulizing cause-specific hazard ratio from all causes with confidence limits and Wald test p-values. |
| publish.ci | Publish tables with confidence intervals |
| publish.coxph | Tabulize hazard ratios with confidence intervals and p-values. |
| publish.glm | Tabulize regression coefficients with confidence intervals and p-values. |
| publish.htest | Pretty printing of test results. |
| publish.matrix | Publishing a matrix in raw, org, latex, or muse format |
| publish.MIresult | Present logistic regression and Cox regression obtained with mitools::MIcombine based on smcfcs::smcfcs multiple imputation analysis |
| publish.riskRegression | Publishing results of riskRegression |
| publish.Score | Publish predictive accuracy results |
| publish.summary.aov | Format summary table of aov results |
| publish.survdiff | Alternative summary of survdiff results |
| regressionTable | Regression table |
| SpaceT | A study was made of all 26 astronauts on the first eight space shuttle flights (Bungo et.al., 1985). On a voluntary basis 17 astronauts consumed large quantities of salt and fluid prior to landing as a countermeasure to space deconditioning, while nine did not. |
| Spaghettiogram | Spaghettiogram |
| spaghettiogram | Spaghettiogram |
| specialFrame | Special frame |
| splinePlot.lrm | Plot predictions of logistic regression |
| stripes | Background and grid color control. |
| subgroupAnalysis | Subgroup Analysis - Interactions and estimates |
| summary.ci | Summarize confidence intervals |
| summary.regressionTable | Formatting regression tables |
| summary.subgroupAnalysis | summary.subgroupAnalysis |
| summary.univariateTable | Preparing univariate tables for publication |
| summary.utable | Preparing univariate tables for publication |
| sutable | Fast summary of a univariate table |
| table2x2 | 2x2 table calculus for teaching |
| trace | trace data |
| traceR | traceR data |
| Units | Add units to data set |
| univariateTable | Univariate table |
| utable | Univariate table |