Methods for High-Dimensional Repeated Measures Data

Documentation for package ‘RepeatedHighDim’ version 2.4.0

RepeatedHighDim-package	RepeatedHighDim Package
bag	Calculates the bag
depmed	Calculates the depth median.
fc_ci	Calculation of adjusted confidence intervals
fc_plot	Volcano plot of adjusted confidence intervals
GA_diagplot	Diagnostic plot for comparison of two correlation matrices.
gem	Plots a gemstone to an interactive graphics device
GlobTestMissing	Detection of global group effect
gridfun	Specifies grid for the calculation of the halfspace location depths
hldepth	Calculates the halfspace location depth
iter_matrix	Genetic algorithm for generating correlated binary data
loop	Calculates the fence and the loop
netRNA	netRNA:Network meta-analysis for gene expression data
RepeatedHighDim	RepeatedHighDim Package
RHighDim	Detection of global group effect
rho_bounds	Calculate lower and upper the bounds for pairwise correlations
rmvbinary_EP	Simulating correlated binary variables using the algorithm by Emrich and Piedmonte (1991)
rmvbinary_QA	Simulating correlated binary variables using the algorithm by Qaqish (2003)
scTC_bpplot	scTC_bpplot: Post-trim breakpoint heatmap for scTrimClust results
scTC_trim_effect	scTC_trim_effect: Compare scTrimClust trimming against default Seurat analysis
scTrimClust	scTrimClust: Cluster visualization with alpha hull-based outlier detection
sequence_probs	Calculation of probabilities for binary sequences
start_matrix	Setup of the start matrix
summary_RHD	Summary of RHighDim function