Random-Effect Multiple QTL Mapping in Autopolyploids

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Documentation for package ‘qtlpoly’ version 0.2.4

• DESCRIPTION file.

Help Pages

B2721	Autotetraploid potato dataset
breeding_values	Prediction of QTL-based breeding values from REMIM model
feim	Fixed-effect interval mapping (FEIM)
fit_model	Fits multiple QTL models
fit_model2	Fits multiple QTL models
hexafake	Simulated autohexaploid dataset.
maps4x	Autotetraploid potato map
maps6x	Simulated autohexaploid map
modify_qtl	Modify QTL model
null_model	Null model
null_model2	Null model
optimize_qtl	Model optimization
permutations	Fixed-effect interval mapping (FEIM) model permutations
pheno4x	Autotetraploid potato phenotypes
pheno6x	Simulated phenotypes
plot.qtlpoly.bvalues	Prediction of QTL-based breeding values from REMIM model
plot.qtlpoly.effects	QTL allele effect estimation
plot.qtlpoly.perm	Fixed-effect interval mapping (FEIM) model permutations
plot_profile	Logarithm of _P_-value (LOP) profile plots
plot_qtl	QTL heritability and significance plot
plot_sint	QTLs with respective support interval plots
print.qtlpoly.data	Read genotypic and phenotypic data
print.qtlpoly.feim	Fixed-effect interval mapping (FEIM)
print.qtlpoly.modify	Modify QTL model
print.qtlpoly.null	Null model
print.qtlpoly.optimize	Model optimization
print.qtlpoly.perm	Fixed-effect interval mapping (FEIM) model permutations
print.qtlpoly.profile	QTL profiling
print.qtlpoly.remim	Random-effect multiple interval mapping (REMIM)
print.qtlpoly.search	QTL forward search
print.qtlpoly.simul	Simulations of multiple QTL
profile_qtl	QTL profiling
qtl_effects	QTL allele effect estimation
read_data	Read genotypic and phenotypic data
read_data2	Read genotypic and phenotypic data
remim	Random-effect multiple interval mapping (REMIM)
remim2	Random-effect multiple interval mapping (REMIM)
search_qtl	QTL forward search
simulate_qtl	Simulations of multiple QTL
summary.qtlpoly.fitted	Fits multiple QTL models