| add_utm_columns | Add UTM coordinates to a data frame |
| cAIC | Calculate conditional AIC |
| coef.sdmTMB | Get fixed-effect coefficients |
| dharma_residuals | DHARMa residuals |
| dogfish | Example fish survey data |
| Effect.sdmTMB | Calculate effects |
| emmeans.sdmTMB | Estimated marginal means with the 'emmeans' package with 'sdmTMB' |
| gamma_cv | Prior distributions |
| gather_sims | Extract parameter simulations from the joint precision matrix |
| get_cog | Extract a relative biomass/abundance index, center of gravity, or effective area occupied |
| get_crs | Add UTM coordinates to a data frame |
| get_eao | Extract a relative biomass/abundance index, center of gravity, or effective area occupied |
| get_index | Extract a relative biomass/abundance index, center of gravity, or effective area occupied |
| get_index_sims | Calculate a population index via simulation from the joint precision matrix |
| get_index_split | Extract a relative biomass/abundance index, center of gravity, or effective area occupied |
| get_pars | Get TMB parameter list |
| halfnormal | Prior distributions |
| hbll_s_grid | Example fish survey data |
| make_mesh | Construct an SPDE mesh for sdmTMB |
| mvnormal | Prior distributions |
| normal | Prior distributions |
| pcod | Example fish survey data |
| pcod_2011 | Example fish survey data |
| pcod_mesh_2011 | Example fish survey data |
| pc_matern | Prior distributions |
| plot.sdmTMBmesh | Construct an SPDE mesh for sdmTMB |
| plot_anisotropy | Plot anisotropy from an sdmTMB model |
| plot_anisotropy2 | Plot anisotropy from an sdmTMB model |
| plot_pc_matern | Plot PC Matérn priors |
| plot_smooth | Plot a smooth term from an sdmTMB model |
| predict.sdmTMB | Predict from an sdmTMB model |
| project | Project from an 'sdmTMB' model using simulation |
| qcs_grid | Example fish survey data |
| replicate_df | Replicate a prediction data frame over time |
| residuals.sdmTMB | Residuals method for sdmTMB models |
| run_extra_optimization | Run extra optimization on an already fitted object |
| sanity | Sanity check of an sdmTMB model |
| sdmTMB | Fit a spatial or spatiotemporal GLMM with TMB |
| sdmTMBcontrol | Optimization control options |
| sdmTMBpriors | Prior distributions |
| sdmTMB_cv | Cross validation with sdmTMB models |
| sdmTMB_simulate | Simulate from a spatial/spatiotemporal model |
| sdmTMB_stacking | Perform stacking with log scores on 'sdmTMB_cv()' output |
| set_delta_model | Set delta model for 'ggeffects::ggpredict()' |
| simulate.sdmTMB | Simulate from a fitted sdmTMB model |
| spread_sims | Extract parameter simulations from the joint precision matrix |
| tidy.sdmTMB | Turn sdmTMB model output into a tidy data frame |
| tidy.sdmTMB_cv | Turn sdmTMB model output into a tidy data frame |
| visreg2d_delta | Plot sdmTMB models with the 'visreg' package |
| visreg_delta | Plot sdmTMB models with the 'visreg' package |
| wcvi_grid | Example fish survey data |
| yelloweye | Example fish survey data |