Gene Set Analysis Exploiting Pathway Topology
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Documentation for package ‘topologyGSA’ version 1.5.0
Help Pages
| clique.mean.test | Comparison of all the cliques of a pathway. |
| clique.var.test | Testing the concentration matrices of all cliques of a pathway. |
| dag_bcell | DAG representation of the B cell receptor signaling pathway |
| pathway.mean.test | Testing the means of a pathway. |
| pathway.var.test | Testing the concentration matrices of a pathway. |
| print.clique.mean.test | Print results of statistical tests. |
| print.clique.var.test | Print results of statistical tests. |
| print.pathway.mean.test | Print results of statistical tests. |
| print.pathway.var.test | Print results of statistical tests. |
| render.significant.cliques | Graphical display of the significant cliques |
| y1 | Gene expression signatures in acute lymphocytic leukemia for BCR signaling pathway |
| y2 | Gene expression signatures in acute lymphocytic leukemia for BCR signaling pathway |