| all_trees | Simulated Tree Data with Different Proximity Parameter Value |
| apicomplexa | Apicomplexa gene trees sample data set. |
| as.matrix.multiPhylo | Vectorize a Set of Phylognetic Trees |
| as.vector.phylo | Vectorize a Phylogenetic Tree |
| coef.cv.tropsvm | Extract Optimal Tropical Hyperplane from a cv.tropsvm object |
| coef.tropsvm | Extract Optimal Tropical Hyperplane from a tropsvm object |
| cv.tropsvm | Cross-Validation for Tropical Support Vector Machines |
| lungfish | Coelacanths genome and transcriptome data |
| plot.troppca | Plot the Tropical Principal Components with Data Projections |
| predict.cv.tropsvm | Predict Method for Tropical Support Vector Machines based on Cross-Validation |
| predict.tropsvm | Predict Method for Tropical Support Vector Machines |
| read.nexus.to.data.matrix | Read NEXUS-formatted trees from two categories into a data matrix |
| read.tree.to.data.matrix | Read Newick-formatted trees in two categories into a data matrix |
| sim_trees | Simulated Tree Data |
| summary.cv.tropsvm | Summarize an Analysis of Cross-Validated Tropical Support Vector Machine |
| tropdet | Tropical Determinant of a Matrix |
| tropFW | Tropical Fermat-Weber Point |
| troppca.linsp | Tropical Principal Component Analysis by Tropical Linear Space |
| troppca.linsp2poly | Tropical Principal Component Analysis by Polytope Converted from Linear Space |
| troppca.poly | Tropical Principal Component Analysis by Tropical Polytope |
| tropproj.linsp | Projection on Tropical Linear Space |
| tropproj.poly | Projection on Tropical Polytope |
| tropsvm | Tropical Support Vector Machines |