Easily Install and Load the 'openMSE' Packages

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Documentation for package ‘openMSE’ version 1.0.1

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At_Age_TS_Variables At-Age Time Series Variables
cm2inch Convert numeric values to a different scale
demo Run an example MSE
divide_10 Convert numeric values to a different scale
divide_100 Convert numeric values to a different scale
divide_1000 Convert numeric values to a different scale
get_Assess_Estimates Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE
get_Assess_Estimates.list Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE
get_Assess_Estimates.MMSE Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE
get_Assess_Estimates.MSE Create a data.frame with estimated values from a 'SAMtool' assessment method used in an MSE
get_at_Age Create a data.frame with at-age schedules by simulation and year
get_at_Age.Hist Create a data.frame with at-age schedules by simulation and year
get_at_Age.list Create a data.frame with at-age schedules by simulation and year
get_at_Age.MMSE Create a data.frame with at-age schedules by simulation and year
get_at_Age.MSE Create a data.frame with at-age schedules by simulation and year
get_at_Age.multiHist Create a data.frame with at-age schedules by simulation and year
get_at_age_ts Create a data.frame with time-series information by simulation and year
get_at_Length Create a data.frame with at-length selectivity and retention schedules by simulation and year
get_at_Length.multiHist Create a data.frame with at-length selectivity and retention schedules by simulation and year
get_Biomass Create a data.frame with time-series information by simulation and year
get_Biomass_at_Age Create a data.frame with time-series information by simulation and year
get_F Create a data.frame with time-series information by simulation and year
get_Landings Create a data.frame with time-series information by simulation and year
get_LifeHistory Get Life History Parameters
get_LifeHistory.Hist Get Life History Parameters
get_LifeHistory.list Get Life History Parameters
get_LifeHistory.MMSE Get Life History Parameters
get_LifeHistory.MSE Get Life History Parameters
get_Metadata Extract the meta-data from a 'Hist' or 'MSE' object
get_Metadata.Hist Extract the meta-data from a 'Hist' or 'MSE' object
get_Metadata.list Extract the meta-data from a 'Hist' or 'MSE' object
get_Metadata.MMSE Extract the meta-data from a 'Hist' or 'MSE' object
get_Metadata.MSE Extract the meta-data from a 'Hist' or 'MSE' object
get_Number_at_Age Create a data.frame with time-series information by simulation and year
get_Recruits Create a data.frame with time-series information by simulation and year
get_Removals Create a data.frame with time-series information by simulation and year
get_SB_SBMSY Create a data.frame with time-series information by simulation and year
get_SSB Create a data.frame with time-series information by simulation and year
get_SSB_at_Age Create a data.frame with time-series information by simulation and year
get_ts Create a data.frame with time-series information by simulation and year
get_ts.Hist Create a data.frame with time-series information by simulation and year
get_ts.list Create a data.frame with time-series information by simulation and year
get_ts.MMSE Create a data.frame with time-series information by simulation and year
get_ts.MSE Create a data.frame with time-series information by simulation and year
get_ts.multiHist Create a data.frame with time-series information by simulation and year
get_Years Create a data.frame with Historical and Projection years
get_Years.Hist Create a data.frame with Historical and Projection years
get_Years.MMSE Create a data.frame with Historical and Projection years
get_Years.MSE Create a data.frame with Historical and Projection years
get_Years.multiHist Create a data.frame with Historical and Projection years
inch2cm Convert numeric values to a different scale
inch2mm Convert numeric values to a different scale
kg2lb Convert numeric values to a different scale
kg2mt Convert numeric values to a different scale
kg2_1000lb Convert numeric values to a different scale
lb2kg Convert numeric values to a different scale
lb2mt Convert numeric values to a different scale
mm2inch Convert numeric values to a different scale
multiply_10 Convert numeric values to a different scale
multiply_100 Convert numeric values to a different scale
multiply_1000 Convert numeric values to a different scale
plot_at_Age Plot at-Age schedules
plot_Biomass Plots the median and quantiles of a time-series
plot_F Plots the median and quantiles of a time-series
plot_Landings Plots the median and quantiles of a time-series
plot_Length Plot at-Age schedules
plot_LifeHistory Plots the median and quantiles of a time-series
plot_Maturity Plot at-Age schedules
plot_N.Mortality Plot at-Age schedules
plot_Recruits Plots the median and quantiles of a time-series
plot_Removals Plots the median and quantiles of a time-series
plot_Retention Plot at-Age schedules
plot_Select Plot at-Age schedules
plot_Select_Maturity Plot at-Age schedules
plot_SSB Plots the median and quantiles of a time-series
plot_TS Plots the median and quantiles of a time-series
plot_Weight Plot at-Age schedules
theme_default A ggplot2 theme
TS_Variables Time Series Variables
userguide Open the openMSE Documentation website
valid_at_age_ts_variables Create a data.frame with time-series information by simulation and year
valid_ts_variables Create a data.frame with time-series information by simulation and year